Os08g0304900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AtMMH-1 protein (F6D8.28 protein).
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Os08g0304900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AtMMH-1 protein (F6D8.28 protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.76 | 0.325 | 8.31 | -0.0647 | 0.989 | -0.614 | -0.167 | 1.22 | -0.681 | 18.7 | 9.61 | 1450 | -- | -- |
| 50.49 | 0.331 | 8.31 | -0.000279 | 1 | -0.572 | -0.211 | -- | -0.677 | 18.5 | 9.612 | 1431 | -- | -- |
| 47.76 | 0.322 | 8.31 | -0.0561 | 0.993 | -0.633 | -- | 1.38 | -0.69 | 19 | 9.497 | 1488 | -- | -- |
| 50.39 | 0.331 | 8.3 | 0.0628 | 0.974 | -0.57 | -- | -- | -0.647 | 18.5 | 9.65 | 1417 | -- | -- |
| 49.8 | 0.329 | 8.3 | -0.0699 | -- | -1.33 | -- | 1.36 | -0.679 | -- | 12.9 | 812 | -- | -- |
| 59.39 | 0.361 | 8.28 | 0.0673 | 0.973 | -- | -0.172 | -- | -0.534 | 18.6 | -- | -- | -- | -- |
| 59.46 | 0.361 | 8.28 | 0.0696 | 0.972 | -- | -- | -- | -0.535 | 18.7 | -- | -- | -- | -- |
| 50.34 | 0.33 | 8.27 | 0.0464 | -- | -1.38 | -- | -- | -0.604 | -- | 9.966 | 847 | -- | -- |
| 50.24 | 0.33 | 8.29 | -- | 0.925 | -0.628 | -- | -- | -0.637 | 18.1 | 8.504 | 1344 | -- | -- |
| 108.73 | 0.487 | 8.26 | 0.0468 | -- | -- | -- | -- | -0.554 | -- | -- | -- | -- | -- |
| 59.59 | 0.361 | 8.28 | -- | 0.971 | -- | -- | -- | -0.543 | 18.7 | -- | -- | -- | -- |
| 50.39 | 0.331 | 8.27 | -- | -- | -1.38 | -- | -- | -0.609 | -- | 9.407 | 850 | -- | -- |
| 108.79 | 0.487 | 8.26 | -- | -- | -- | -- | -- | -0.56 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.57 | radiation | 10 | 720 | < th | dose dependent | rect. | 20 | 22 |
| 2 | 45.75 | radiation | 10 | 720 | < th | dose dependent | rect. | 6 | 17 |
| 9 | 46.81 | radiation | 10 | 720 | < th | dose dependent | sin | 23 | NA |
| 18 | 47.08 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 9 |
| 20 | 47.18 | radiation | 20 | 720 | < th | dose independent | rect. | 10 | 22 |
| 21 | 47.19 | radiation | 10 | 720 | < th | dose dependent | rect. | 1 | 22 |
| 36 | 47.47 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 21 |
| 38 | 47.48 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 12 |
| 55 | 47.62 | radiation | 20 | 720 | < th | dose independent | rect. | 11 | 12 |
| 57 | 47.64 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 22 |
| 64 | 47.71 | radiation | 40 | 720 | < th | dose dependent | rect. | 10 | 22 |
| 67 | 47.72 | radiation | 20 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 101 | 47.83 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 195 | 47.99 | radiation | 10 | 720 | < th | dose independent | rect. | 6 | 17 |
| 200 | 47.99 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 203 | 48.00 | radiation | 40 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 216 | 48.04 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 221 | 48.06 | radiation | 10 | 720 | < th | dose independent | sin | 21 | NA |
| 318 | 48.45 | radiation | 30 | 720 | < th | dose independent | rect. | 11 | 6 |
| 321 | 48.46 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 353 | 48.53 | radiation | 10 | 720 | < th | dose independent | rect. | 20 | 23 |
| 367 | 48.56 | radiation | 10 | 720 | < th | dose independent | rect. | 1 | 23 |
| 449 | 48.73 | radiation | 10 | 720 | < th | dose independent | no | NA | NA |
| 470 | 48.76 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 480 | 48.78 | humidity | 70 | 720 | > th | dose independent | rect. | 11 | 12 |
| 494 | 48.81 | radiation | 10 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 513 | 48.85 | radiation | 10 | 720 | < th | dose independent | rect. | 13 | 5 |
| 529 | 48.88 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 535 | 48.89 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 537 | 48.89 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 657 | 48.99 | radiation | 10 | 720 | < th | dose independent | rect. | 6 | 23 |
| 681 | 49.01 | radiation | 40 | 720 | < th | dose dependent | rect. | 11 | 6 |
| 689 | 49.02 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 22 |
| 697 | 49.03 | humidity | 80 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 789 | 49.14 | radiation | 10 | 1440 | < th | dose dependent | sin | 13 | NA |
| 805 | 49.16 | radiation | 10 | 1440 | < th | dose independent | sin | 14 | NA |
| 852 | 49.23 | radiation | 40 | 720 | < th | dose dependent | rect. | 14 | 9 |
| 899 | 49.30 | radiation | 40 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 919 | 49.32 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 941 | 49.33 | humidity | 50 | 720 | > th | dose dependent | rect. | 10 | 13 |
| 958 | 49.34 | radiation | 20 | 720 | < th | dose dependent | rect. | 14 | 9 |
| 984 | 49.38 | humidity | 70 | 720 | > th | dose independent | rect. | 11 | 20 |