BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0304900 Os08g0304900|AK063295
         (409 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52500.2  | chr1:19560043-19562855 FORWARD LENGTH=391          425   e-119

>AT1G52500.2 | chr1:19560043-19562855 FORWARD LENGTH=391
          Length = 390

 Score =  425 bits (1092), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/283 (70%), Positives = 234/283 (82%), Gaps = 6/283 (2%)

Query: 1   MPELPEVEVARRALEEHCVGKRIVRCSAADDTKVIDGVAPPRLEAALVGRTISAARRKGK 60
           MPELPEVE ARRA+EE+C+GK+I R   ADD KVI G++P   + +++G+TI +ARRKGK
Sbjct: 1   MPELPEVEAARRAIEENCLGKKIKRVIIADDNKVIHGISPSDFQTSILGKTIISARRKGK 60

Query: 61  NLWLALDSPPFPSFQFGMAGAIYIKGVELSKYKRSAVSPTEEWPLKYSKLLVVMDDGLEF 120
           NLWL LDSPPFPSFQFGMAGAIYIKGV ++KYKRSAV  +EEWP KYSK  V +DDGLE 
Sbjct: 61  NLWLELDSPPFPSFQFGMAGAIYIKGVAVTKYKRSAVKDSEEWPSKYSKFFVELDDGLEL 120

Query: 121 SFTDKRRFAKIRFLDNPEAVPPISELGPDALFEPLHLDDFVESLSRKKAPIKALLLDQSF 180
           SFTDKRRFAK+R L NP +V PISELGPDAL EP+ +D+F ESL++KK  IK LLLDQ +
Sbjct: 121 SFTDKRRFAKVRLLANPTSVSPISELGPDALLEPMTVDEFAESLAKKKITIKPLLLDQGY 180

Query: 181 ISGIGNWIADEVLYQARIHPMQTASMISKEKCKALHQCIIEVIEKSLEVGCNSSQYPENW 240
           ISGIGNWIADEVLYQARIHP+QTAS +SKE+C+ALH  I EVIEK++EV  +SSQ+P  W
Sbjct: 181 ISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIKEVIEKAVEVDADSSQFPSYW 240

Query: 241 IFHSREKKP------GKKIDFITVGGRTSAYVPELQKLDGIDA 277
           IFH+REKKP      GKKIDFIT GGRT+AYVPELQKL G DA
Sbjct: 241 IFHNREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKLYGKDA 283



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,115,803
Number of extensions: 317865
Number of successful extensions: 1033
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1032
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 308
Effective length of database: 8,337,553
Effective search space: 2567966324
Effective search space used: 2567966324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)