Os06g0643600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Formamidopyrimidine-DNA glycolase family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0643600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Formamidopyrimidine-DNA glycolase family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.71 | 0.234 | 8.21 | -0.401 | 0.0354 | -1.05 | 0.24 | 0.351 | -0.175 | 18.2 | 29.8 | 29 | -- | -- |
| 24.84 | 0.232 | 8.21 | -0.348 | 0.0347 | -1.08 | 0.238 | -- | -0.162 | 19.6 | 29.7 | 26 | -- | -- |
| 24.84 | 0.232 | 8.21 | -0.394 | 0.0376 | -1.04 | -- | 0.297 | -0.171 | 17.3 | 29.82 | 28 | -- | -- |
| 24.96 | 0.233 | 8.21 | -0.348 | 0.037 | -1.06 | -- | -- | -0.162 | 18.4 | 29.7 | 21 | -- | -- |
| 24.9 | 0.232 | 8.21 | -0.401 | -- | -1.07 | -- | 0.292 | -0.174 | -- | 29.9 | 28 | -- | -- |
| 39.64 | 0.295 | 8.16 | -0.0944 | 0.377 | -- | 0.106 | -- | 0.0496 | 14.7 | -- | -- | -- | -- |
| 39.68 | 0.295 | 8.16 | -0.0918 | 0.377 | -- | -- | -- | 0.0502 | 14.6 | -- | -- | -- | -- |
| 25.01 | 0.233 | 8.21 | -0.351 | -- | -1.07 | -- | -- | -0.163 | -- | 29.72 | 29 | -- | -- |
| 27.73 | 0.247 | 8.19 | -- | 0.0881 | -0.902 | -- | -- | -0.0885 | 16.4 | 30.15 | 19 | -- | -- |
| 47.96 | 0.324 | 8.16 | -0.108 | -- | -- | -- | -- | 0.0407 | -- | -- | -- | -- | -- |
| 39.9 | 0.295 | 8.16 | -- | 0.378 | -- | -- | -- | 0.0604 | 14.6 | -- | -- | -- | -- |
| 28.03 | 0.247 | 8.19 | -- | -- | -0.983 | -- | -- | -0.102 | -- | 30.39 | 19 | -- | -- |
| 48.26 | 0.324 | 8.16 | -- | -- | -- | -- | -- | 0.0527 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.54 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 2 | 24.59 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 4 | 24.67 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 6 | 24.72 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 7 | 24.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 8 | 24.74 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 10 | 24.75 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 15 | 24.83 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 23 | 25.14 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 37 | 25.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 39 | 25.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 2 | 23 |
| 43 | 25.50 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 46 | 25.58 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 49 | 25.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 58 | 25.91 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 63 | 26.09 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 67 | 26.23 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 79 | 26.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 88 | 26.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 89 | 26.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 126 | 26.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 134 | 26.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 137 | 26.65 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 139 | 26.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 148 | 26.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 173 | 26.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 178 | 26.74 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 189 | 26.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 193 | 26.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 220 | 26.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 260 | 26.90 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 298 | 26.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 350 | 26.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 385 | 27.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 441 | 27.06 | temperature | 10 | 1440 | > th | dose dependent | sin | 14 | NA |
| 744 | 27.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 855 | 27.22 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 875 | 27.23 | temperature | 10 | 1440 | > th | dose dependent | sin | 5 | NA |
| 934 | 27.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 12 |
| 958 | 27.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 10 |