BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0269500 Os08g0269500|AK062738
         (131 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0269500  Conserved hypothetical protein                      198   1e-51
Os08g0269700  Conserved hypothetical protein                      107   2e-24

>Os08g0269500 Conserved hypothetical protein
          Length = 131

 Score =  198 bits (503), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/131 (78%), Positives = 103/131 (78%)

Query: 1   MMKSXXXXXXXXXXXXSHGTWCAAAADRSHRITTAHLRPHLHVEELHGKKLMEIQVPRKL 60
           MMKS            SHGTWCAAAADRSHRITTAHLRPHLHVEELHGKKLMEIQVPRKL
Sbjct: 1   MMKSFLALFLLLLTFASHGTWCAAAADRSHRITTAHLRPHLHVEELHGKKLMEIQVPRKL 60

Query: 61  GHEVKVPKRMAIAHKXXXXXXXXXXXXXXXXVSESRPRNGKNGAATLPAPATTSILALAI 120
           GHEVKVPKRMAIAHK                VSESRPRNGKNGAATLPAPATTSILALAI
Sbjct: 61  GHEVKVPKRMAIAHKGGSAGAAAAAGAGGGGVSESRPRNGKNGAATLPAPATTSILALAI 120

Query: 121 TCAAVLSSFSF 131
           TCAAVLSSFSF
Sbjct: 121 TCAAVLSSFSF 131



>Os08g0269700 Conserved hypothetical protein
          Length = 136

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/140 (50%), Positives = 80/140 (57%), Gaps = 13/140 (9%)

Query: 1   MMKSXXXXXXXXXXXXSHGTWCAAAADRSHRITTAHLRPHLHVEELH---GKKLMEIQVP 57
           M KS            S GTWCAA  +RSHRI  AHLRPH+ VEE H   GKKL+EIQVP
Sbjct: 1   MKKSSLAVFLLLLTLASQGTWCAA--ERSHRINGAHLRPHVQVEESHITEGKKLLEIQVP 58

Query: 58  RKLGHEVKVPKRMAIAHKXXXXXXXXXXXXXXXXVS------ESRPRNGKNGAATLPAPA 111
           RKLGHEVK PKRMAIAHK                 +      ++RPR  KN AA      
Sbjct: 59  RKLGHEVKFPKRMAIAHKGGSTGGGSTGGTTGGASNVNSGPADTRPR--KNAAAMPAPAT 116

Query: 112 TTSILALAITCAAVLSSFSF 131
           TTSILALA + A  +S+FSF
Sbjct: 117 TTSILALAFSFAIAVSAFSF 136



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.127    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,605,015
Number of extensions: 111840
Number of successful extensions: 351
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 2
Length of query: 131
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 42
Effective length of database: 12,388,755
Effective search space: 520327710
Effective search space used: 520327710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 150 (62.4 bits)