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Os08g0269700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.72 (0.044) R2 : 0.782
β1 : -2.36 (0.161) R2dD : 0.107 R2D : 0.0655
β2 : 4.03 (0.115) R2dC : 0.596 R2C : 0.534
β3 : -14.5 (1.28) R2dE : 0.177 R2E : -0.147
β4 : 2.83 (0.527) R2dD*C : 0.0137 R2D*C : 0.0154
β5 : 46.5 (4.42) R2dD*E : 0.152 R2D*E : -0.0946
γ1 : -1.16 (0.094) R2dN8 : 0.0973 R2N8 : 0.019
σ : 0.827
deviance : 310.13
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C
peak time of C : 5.43
E
wheather : wind
threshold : 1.036
memory length : 87
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.0683
open length of G : 1.05

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
310.13 0.827 9.72 -2.36 4.03 -14.5 2.83 46.5 -1.16 5.43 1.036 87 0.0683 1.05
417.45 0.952 9.55 -1.79 4.28 -8.28 1.49 -- -1.03 5.31 1.31 71 0.4 0.817
329.6 0.846 9.72 -2.36 4.04 -15.2 -- 49.6 -1.17 5.38 1.016 86 0.0757 1.05
356.77 0.88 9.68 -1.87 4.33 -7.64 -- -- -1 5.28 0.984 51 0.332 0.916
1175.39 1.6 9.78 -2.25 -- -14 -- 51.6 -1.05 -- 0.7574 84 0.0167 1.29
401.15 0.939 9.74 -2.46 3.94 -- 3.23 -- -1.09 5.52 -- -- -- --
426.8 0.967 9.74 -2.44 3.96 -- -- -- -1.11 5.48 -- -- -- --
1177.72 1.6 9.81 -2.2 -- -7.66 -- -- -0.922 -- 0.8921 50 0.317 0.916
507.49 1.05 9.7 -- 3.99 -7.99 -- -- -0.887 5.43 0.9438 51 0.333 0.867
1241.6 1.65 9.8 -2.31 -- -- -- -- -1.01 -- -- -- -- --
584.3 1.13 9.68 -- 3.92 -- -- -- -0.836 5.51 -- -- -- --
1329.45 1.7 9.75 -- -- -7.15 -- -- -0.778 -- 0.9 51 0.342 0.909
1382.76 1.74 9.74 -- -- -- -- -- -0.755 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 315.23 wind 1 90 < th dose dependent rect. 24 1
2 321.17 wind 1 90 < th dose independent rect. 24 1
3 341.40 radiation 10 1440 < th dose dependent rect. 13 2
7 343.55 radiation 10 1440 < th dose dependent rect. 10 6
9 344.36 atmosphere 1005 90 < th dose dependent rect. 24 3
20 346.60 radiation 10 1440 > th dose independent rect. 11 5
31 347.86 radiation 10 1440 > th dose independent rect. 11 2
35 348.06 humidity 80 1440 > th dose independent rect. 11 5
36 348.13 humidity 80 1440 > th dose independent rect. 13 1
56 349.51 humidity 80 1440 < th dose independent rect. 13 1
78 350.32 humidity 80 1440 < th dose independent rect. 11 4
82 350.44 atmosphere 1005 10 < th dose dependent rect. 24 6
107 351.14 humidity 60 720 > th dose dependent rect. 14 18
125 351.68 humidity 70 1440 > th dose dependent rect. 12 2
141 351.98 humidity 70 720 > th dose dependent rect. 12 14
148 352.06 radiation 10 1440 < th dose dependent rect. 10 18
149 352.07 radiation 10 1440 < th dose dependent rect. 12 10
153 352.11 radiation 10 1440 < th dose independent rect. 14 2
167 352.26 radiation 10 1440 < th dose dependent rect. 12 16
206 352.79 humidity 80 720 > th dose independent rect. 11 15
282 353.96 humidity 80 1440 > th dose independent rect. 15 1
283 353.96 humidity 80 720 < th dose independent rect. 10 16
377 354.93 atmosphere 1005 270 < th dose independent rect. 23 2
382 354.97 radiation 10 1440 > th dose independent sin 19 NA
394 355.12 radiation 1 1440 < th dose independent rect. 11 1
398 355.16 humidity 90 270 > th dose dependent rect. 5 21
403 355.22 humidity 70 720 > th dose dependent sin 15 NA
406 355.24 radiation 1 1440 < th dose independent rect. 9 6
434 355.43 humidity 80 720 < th dose independent rect. 10 11
448 355.51 radiation 1 1440 < th dose independent rect. 9 4
450 355.51 humidity 90 720 > th dose dependent rect. 18 8
453 355.54 humidity 90 270 < th dose dependent rect. 18 11
482 355.73 radiation 10 1440 < th dose dependent sin 19 NA
500 355.86 humidity 80 720 > th dose independent rect. 11 20
529 356.08 humidity 80 720 < th dose independent sin 18 NA
590 356.44 humidity 90 30 > th dose dependent rect. 24 3
594 356.50 atmosphere 1005 270 < th dose independent rect. 22 4
638 356.90 humidity 80 720 > th dose independent sin 18 NA
674 357.18 humidity 80 1440 < th dose independent rect. 23 18
741 357.68 humidity 80 1440 > th dose independent rect. 23 18
752 357.79 humidity 70 720 > th dose dependent rect. 4 22
756 357.82 humidity 80 1440 > th dose independent rect. 9 11
758 357.82 humidity 90 270 > th dose dependent sin 15 NA
783 357.97 temperature 20 270 > th dose independent rect. 12 14
811 358.17 humidity 80 1440 > th dose independent sin 23 NA
834 358.29 humidity 80 1440 < th dose independent sin 23 NA
858 358.45 humidity 90 720 > th dose independent rect. 20 5
870 358.53 humidity 80 1440 < th dose independent rect. 3 14
937 358.84 humidity 80 1440 > th dose independent rect. 3 14
997 359.13 humidity 80 720 > th dose independent rect. 4 22