BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0265500 Os08g0265500|AK100508
         (336 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0265500  Similar to Lactation elevated 1 (Fragment)          667   0.0  
Os03g0851900  AFG1-like ATPase family protein                     145   5e-35

>Os08g0265500 Similar to Lactation elevated 1 (Fragment)
          Length = 336

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/324 (100%), Positives = 324/324 (100%)

Query: 13  RPANWRKKRIHFHDFMLNVHSRLQMHKGVSDPLEVVAAEISDEAIILCLDEFMVTDVADA 72
           RPANWRKKRIHFHDFMLNVHSRLQMHKGVSDPLEVVAAEISDEAIILCLDEFMVTDVADA
Sbjct: 13  RPANWRKKRIHFHDFMLNVHSRLQMHKGVSDPLEVVAAEISDEAIILCLDEFMVTDVADA 72

Query: 73  MILNRLFRHLFSKGVILVSTSNRAPDQLYEGGLQRDLFLPFIDTLKERCIAHPIGSAVDY 132
           MILNRLFRHLFSKGVILVSTSNRAPDQLYEGGLQRDLFLPFIDTLKERCIAHPIGSAVDY
Sbjct: 73  MILNRLFRHLFSKGVILVSTSNRAPDQLYEGGLQRDLFLPFIDTLKERCIAHPIGSAVDY 132

Query: 133 RQLGSAEQGFYFIGKQYSLLKQKLQTLIGDEEPRPQTVEVVMGRQLQVPLGANGIAYFPF 192
           RQLGSAEQGFYFIGKQYSLLKQKLQTLIGDEEPRPQTVEVVMGRQLQVPLGANGIAYFPF
Sbjct: 133 RQLGSAEQGFYFIGKQYSLLKQKLQTLIGDEEPRPQTVEVVMGRQLQVPLGANGIAYFPF 192

Query: 193 EDLCDRPLGAADYFGLFKKFHTLALDGIPKFGSQNRTAAYRFVTLVDVMYENKARLLCTA 252
           EDLCDRPLGAADYFGLFKKFHTLALDGIPKFGSQNRTAAYRFVTLVDVMYENKARLLCTA
Sbjct: 193 EDLCDRPLGAADYFGLFKKFHTLALDGIPKFGSQNRTAAYRFVTLVDVMYENKARLLCTA 252

Query: 253 DAAPIELFENIVTVAEARKISPRSSRSQKTDDPDLCVDNELGFAKDRTISRLTEINSREY 312
           DAAPIELFENIVTVAEARKISPRSSRSQKTDDPDLCVDNELGFAKDRTISRLTEINSREY
Sbjct: 253 DAAPIELFENIVTVAEARKISPRSSRSQKTDDPDLCVDNELGFAKDRTISRLTEINSREY 312

Query: 313 LEDFEAKLRQPLQGVDNDIDVVLV 336
           LEDFEAKLRQPLQGVDNDIDVVLV
Sbjct: 313 LEDFEAKLRQPLQGVDNDIDVVLV 336



>Os03g0851900 AFG1-like ATPase family protein
          Length = 613

 Score =  145 bits (365), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 137/291 (47%), Gaps = 30/291 (10%)

Query: 56  AIILCLDEFMVTDVADAMILNRLFRHLFSKGVILVSTSNRAPDQLYEGGLQRDLFLPFID 115
           A ILC DE    DV   + L+ +   L S G +LVSTSN+AP+ L + G+QR++FL  + 
Sbjct: 298 ASILCFDEIQTIDVFAVVALSGILSRLLSTGTVLVSTSNKAPEDLNQDGMQREIFLDLLS 357

Query: 116 TLKERCIAHPIGSAVDYRQLGSAE---QGFYF------IGKQYSLLKQKLQTLIGDEEPR 166
            L E C    +G+  DYR+L   +   Q  YF      I   Y  +   +    G     
Sbjct: 358 KLDENCNKILVGTETDYRRLIPTDGLTQIHYFWPLTSDIRSMYEAMWHDITRQTGGNII- 416

Query: 167 PQTVEVVMGRQLQVPLGANGIAYFPFEDLCDRPLGAADYFGLFKKFHTLALDGIPKFGSQ 226
             T+ V+ GR L++P   NG+A F FE LC RP+GAADY  + + +HT+ +  IP    +
Sbjct: 417 SVTIPVMFGRYLEIPKSCNGVARFDFEYLCGRPVGAADYIAIARNYHTIFISDIPAMSMK 476

Query: 227 NRTAAYRFVTLVDVMYENKARLLCTA-----------DAAPIELFENIVTVAEARKISPR 275
            R  A RF+TL+D +Y +  RL+C A           D  P+   E+     EA     R
Sbjct: 477 IRDKARRFITLIDELYNHHCRLVCLAASSIDDLFQGTDEGPLFDLESFQFEGEAEGAKLR 536

Query: 276 ---------SSRSQKTDDPDLCVDNELGFAKDRTISRLTEINSREYLEDFE 317
                     +    T    +    E  FA  R ISRL E+ +  YLE  E
Sbjct: 537 RDVLAEGNVGAAPSPTGLVAILSGQEEMFAFRRAISRLIEMQTSLYLERVE 587



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.140    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,332,154
Number of extensions: 407566
Number of successful extensions: 709
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 2
Length of query: 336
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 235
Effective length of database: 11,762,187
Effective search space: 2764113945
Effective search space used: 2764113945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)