Os03g0851900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AFG1-like ATPase family protein.
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Os03g0851900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AFG1-like ATPase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.15 | 0.216 | 10.5 | -0.557 | 0.91 | -0.654 | 0.379 | -0.484 | -0.0622 | 4.99 | 20.4 | 1250 | -- | -- |
| 21.61 | 0.216 | 10.5 | -0.474 | 0.904 | -0.579 | 0.359 | -- | -0.0445 | 4.99 | 20.5 | 1233 | -- | -- |
| 21.5 | 0.216 | 10.5 | -0.536 | 0.903 | -0.647 | -- | -0.43 | -0.0543 | 4.97 | 20.51 | 1236 | -- | -- |
| 21.88 | 0.218 | 10.5 | -0.473 | 0.914 | -0.588 | -- | -- | -0.0434 | 4.97 | 20.51 | 1233 | -- | -- |
| 58.48 | 0.356 | 10.5 | -0.532 | -- | -0.624 | -- | -0.259 | -0.0197 | -- | 20.8 | 386 | -- | -- |
| 29.59 | 0.255 | 10.5 | -0.713 | 0.887 | -- | 0.477 | -- | -0.175 | 5.17 | -- | -- | -- | -- |
| 30.15 | 0.257 | 10.5 | -0.713 | 0.889 | -- | -- | -- | -0.177 | 5.12 | -- | -- | -- | -- |
| 40.86 | 0.298 | 10.5 | -0.509 | -- | -0.643 | -- | -- | 0.0701 | -- | 25.74 | 263 | -- | -- |
| 25.25 | 0.234 | 10.5 | -- | 0.902 | -0.828 | -- | -- | 0.0641 | 5.02 | 20.1 | 3962 | -- | -- |
| 71.61 | 0.395 | 10.5 | -0.681 | -- | -- | -- | -- | -0.155 | -- | -- | -- | -- | -- |
| 43.55 | 0.309 | 10.5 | -- | 0.877 | -- | -- | -- | -0.098 | 5.15 | -- | -- | -- | -- |
| 47.23 | 0.32 | 10.4 | -- | -- | -0.689 | -- | -- | 0.191 | -- | 25.3 | 269 | -- | -- |
| 83.85 | 0.427 | 10.5 | -- | -- | -- | -- | -- | -0.0793 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 3 | 20.36 | temperature | 10 | 90 | > th | dose dependent | sin | 5 | NA |
| 14 | 20.61 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 21 | 20.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 32 | 20.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 14 |
| 40 | 21.01 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 60 | 21.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 9 |
| 67 | 21.09 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 71 | 21.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 76 | 21.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 9 |
| 77 | 21.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 11 |
| 102 | 21.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 103 | 21.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 176 | 21.22 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 6 |
| 217 | 21.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 290 | 21.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 365 | 21.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 378 | 21.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 455 | 21.55 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 460 | 21.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 501 | 21.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 552 | 21.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 558 | 21.64 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 577 | 21.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 655 | 21.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 659 | 21.74 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 677 | 21.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 733 | 21.84 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 8 |
| 919 | 22.02 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 20 |