BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0851900 Os03g0851900|AK102145
(613 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G25530.1 | chr2:10863059-10866597 FORWARD LENGTH=656 726 0.0
AT4G30490.1 | chr4:14899226-14901883 REVERSE LENGTH=498 182 3e-46
AT4G28070.2 | chr4:13946009-13948462 FORWARD LENGTH=474 171 1e-42
>AT2G25530.1 | chr2:10863059-10866597 FORWARD LENGTH=656
Length = 655
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/539 (64%), Positives = 424/539 (78%), Gaps = 3/539 (0%)
Query: 55 SGPLTLYRDLVSQGKLQHDIYQENVATQLDNLLRRLEQYEMEMEDYHARLSMWENTREKQ 114
SGPLT Y LV QG+LQHD YQE V + +NL RLE +E +MEDYH RL+ WE RE++
Sbjct: 110 SGPLTNYSKLVEQGRLQHDPYQEKVVSAFENLFGRLEHFEKQMEDYHVRLAEWEKKREEE 169
Query: 115 RRRLLVQEAEDKQRDGVWID-EKRG--FLDKLVSRKRRGNIEPGVGKWVSYLNREKKLDT 171
RR+L+V+EAE K+ DG+W K+G L + V +R+ N+EPGVGKWVSYLNRE+KLD+
Sbjct: 170 RRKLMVEEAEKKEDDGMWASVNKQGQKLLGRWVLGRRQMNVEPGVGKWVSYLNRERKLDS 229
Query: 172 LVGQKPVAPIAPKGIYLYGNVGSGKTMLMDMFYGATEGLIKHRRRFHFHEAMLEIHDHMH 231
+VG +P P APKG+Y+YGNVG GKTMLMDMFYGAT+G+I+HR+RFHFHEAML+I++ MH
Sbjct: 230 IVGSRPAVPPAPKGLYIYGNVGCGKTMLMDMFYGATDGIIRHRQRFHFHEAMLKINEQMH 289
Query: 232 DVWKRRDEDKXXXXXXXXXXXXLPFDGKIKEWLIGEEKYKQNTQQNHILLAVADKFLVDR 291
WK +K LP D K+KEWL GEE YKQ Q HIL AVADKFLVD+
Sbjct: 290 KYWKENGAEKPMQYSISSWIMNLPVDEKVKEWLAGEEFYKQQLQMKHILPAVADKFLVDQ 349
Query: 292 QANKSGASILCFDEIQTIDVFAVVALSGILSRLLSTGTVLVSTSNKAPEDLNQDGMQREI 351
Q++K GASILCFDEIQT+DVFA+VALSGI+SRLL+TGTVLV+TSN+AP +LNQDGMQ+EI
Sbjct: 350 QSSKKGASILCFDEIQTVDVFAIVALSGIMSRLLTTGTVLVATSNRAPRELNQDGMQKEI 409
Query: 352 FLDLLSKLDENCNKILVGTETDYRRLIPTDGLTQIHYFWPLTSDIRSMYEAMWHDITRQT 411
F +SKL+++C I +G+E DYRR+ + +HY WPL + +E MW +T Q
Sbjct: 410 FDKFISKLEKHCEIISIGSEVDYRRVAAKNSAENVHYLWPLNDAVLEEFEKMWRQVTDQY 469
Query: 412 GGNIISVTIPVMFGRYLEIPKSCNGVARFDFEYLCGRPVGAADYIAIARNYHTIFISDIP 471
GG I S T+PVMFGR +E+P+SC+GVARF FEYLCGRPVGAADYIA+A+NYHTIFISDIP
Sbjct: 470 GGEITSATLPVMFGRTVEVPESCSGVARFTFEYLCGRPVGAADYIAVAKNYHTIFISDIP 529
Query: 472 AMSMKIRDKARRFITLIDELYNHHCRLVCLAASSIDDLFQGTDEGPLFDLESFQFEGEAE 531
AMSM+IRDKARRFITL+DELYNHHC LV A ++ID+LFQGT EG LFDLESFQFE E E
Sbjct: 530 AMSMEIRDKARRFITLVDELYNHHCCLVSSAETAIDELFQGTAEGTLFDLESFQFETETE 589
Query: 532 GAKLRRDVLAEGNVGAAPSPTGLVAILSGQEEMFAFRRAISRLIEMQTSLYLERVERVH 590
++LRRDVLAEG++ AA SP+ +V++LSG+EEMFAF RA SRLIEMQT LYLE V +H
Sbjct: 590 DSRLRRDVLAEGSISAAGSPSSIVSMLSGEEEMFAFARAASRLIEMQTPLYLEGVRFLH 648
>AT4G30490.1 | chr4:14899226-14901883 REVERSE LENGTH=498
Length = 497
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 121/415 (29%), Positives = 195/415 (46%), Gaps = 79/415 (19%)
Query: 172 LVGQKPVAPIAPKGIYLYGNVGSGKTMLMDMFYGATEGLIKHRRRFHFHEAMLEIHDHMH 231
L+ Q +P+ KG+YLYG VG+GKTMLMD+F+ K ++R HFH+ ML +H +
Sbjct: 152 LMPQTSYSPV--KGLYLYGGVGTGKTMLMDLFFDQLPCTWK-KQRIHFHDFMLSVHSRL- 207
Query: 232 DVWKRRDEDKXXXXXXXXXXXXLPFDGKIKEWLIGEEKYKQNTQQNHILLAVADKFLVDR 291
+K+K ++D V
Sbjct: 208 ------------------------------------QKHK----------GLSDPLEVVA 221
Query: 292 QANKSGASILCFDEIQTIDVFAVVALSGILSRLLSTGTVLVSTSNKAPEDLNQDGMQREI 351
Q A +LC DE DV + L+ + L S G +LV+TSN+ P+ L + G+QR++
Sbjct: 222 QEIAHDAILLCLDEFMVTDVADALILNRLFGHLFSNGVILVATSNRNPDKLYEGGLQRDL 281
Query: 352 FLDLLSKLDENCNKILVGTETDYRRLIPTDGLTQIHYFWPLTSDIRSMYEAMWHDITRQT 411
FL +S L E +G+ DYR+L + F+ + D+ ++ + + +
Sbjct: 282 FLPFISSLKERSVVHEIGSAVDYRKLTSAE-----QGFYFIGKDLSTLLKQKFRQLI--- 333
Query: 412 GGNIIS--VTIPVMFGRYLEIPKSCNGVARFDFEYLCGRPVGAADYIAIARNYHTIFISD 469
G N+++ + V+ GR L+IP NG A F FE LC RP+GAADY + + +HT+ + +
Sbjct: 334 GDNVVARPQVVEVVMGRKLQIPLGANGCAYFPFEELCDRPLGAADYFGLFKKFHTLALDE 393
Query: 470 IPAMSMKIRDKARRFITLIDELYNHHCRLVCLAASSIDDLFQGTDEGPLFDLESFQFEGE 529
IP + R A RF+TL+D +Y + RL+C A ++ +L + + + + G
Sbjct: 394 IPVFGLHNRTAAYRFVTLVDVMYENRARLLCTAEANPQELLE-----KIITISEAKSMGP 448
Query: 530 AEGAKLRRDVLAEGNVGAAPSPTGLVAILSGQEEMFAFRRAISRLIEMQTSLYLE 584
++ R++ + E + E FA R ISRL EM + YLE
Sbjct: 449 RTSSRSRKNDVTE--------------LCVDNELGFAKDRTISRLTEMNSKEYLE 489
>AT4G28070.2 | chr4:13946009-13948462 FORWARD LENGTH=474
Length = 473
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 195/421 (46%), Gaps = 78/421 (18%)
Query: 170 DTLVGQKPVAPIAPKGIYLYGNVGSGKTMLMDMFYGATEGLIKHRRRFHFHEAMLEIHDH 229
+ V V+P+ KG+YLYG VG+GKTMLMD+F+ + +R HFH ML +H
Sbjct: 122 NKFVSHSSVSPV--KGLYLYGGVGTGKTMLMDLFFHQLPASWR-TQRIHFHNFMLSVHSR 178
Query: 230 MHDVWKRRDEDKXXXXXXXXXXXXLPFDGKIKEWLIGEEKYKQNTQQNHILLAVADKFLV 289
+ D P + ++G L +AD+
Sbjct: 179 LQKHKGLED----------------PLE------VVG--------------LEIADE--- 199
Query: 290 DRQANKSGASILCFDEIQTIDVFAVVALSGILSRLLSTGTVLVSTSNKAPEDLNQDGMQR 349
A +LC DE DV + L+ + L + G +LV+TSN+AP++L + G+QR
Sbjct: 200 --------AILLCLDEFMVNDVADALILNRLFRHLFNNGIILVATSNRAPDNLYEGGLQR 251
Query: 350 EIFLDLLSKLDENCNKILVGTETDYRRLIPTDGLTQIHYFWPLTSDIRSMYEAMWHDIT- 408
++FL +S L E C +G+ DYR+L + F+ + DI + + + +
Sbjct: 252 DLFLPFISTLKERCVVREIGSSVDYRKLTSAE-----EGFYFIGKDISGLLKQKFQLLVG 306
Query: 409 RQTGGNIISVTIPVMFGRYLEIPKSCNGVARFDFEYLCGRPVGAADYIAIARNYHTIFIS 468
Q G + + V+ GR L++P + +G A F FE LC RP+GAADY+ + + +HT+ +
Sbjct: 307 DQPAGPQV---VEVVMGRKLQVPLAADGCAYFLFEELCDRPLGAADYLGLFKKFHTLALE 363
Query: 469 DIPAMSMKIRDKARRFITLIDELYNHHCRLVCLAASSIDDLFQGTDEGPLFDLESFQFEG 528
+P + R A RF+TL+D +Y + RL+C A S PL LE
Sbjct: 364 GVPFFGLHNRTAAYRFVTLVDVMYENKARLLCTAEGS-----------PLELLERIVTIS 412
Query: 529 EAEGAKLRRDVLAEGNVGAAPSPTGLVAILSGQEEMFAFRRAISRLIEMQTSLYLERVER 588
+A+ R + + P V E FA R ISRL EM + YLE+ R
Sbjct: 413 DAQQIAPRTSSRSR----KSDDPDLCV----DNELGFAKDRTISRLTEMNSKEYLEQHSR 464
Query: 589 V 589
+
Sbjct: 465 M 465
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,597,637
Number of extensions: 543909
Number of successful extensions: 1537
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1529
Number of HSP's successfully gapped: 5
Length of query: 613
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 509
Effective length of database: 8,255,305
Effective search space: 4201950245
Effective search space used: 4201950245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)