BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0263300 Os08g0263300|AK067503
         (78 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0263300  Conserved hypothetical protein                       72   1e-13
Os11g0452400  Conserved hypothetical protein                       67   3e-12

>Os08g0263300 Conserved hypothetical protein
          Length = 78

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/36 (100%), Positives = 36/36 (100%)

Query: 43 CLEITPPLKSFSVLVGLIGVRFAARLQLFLIDLFGS 78
          CLEITPPLKSFSVLVGLIGVRFAARLQLFLIDLFGS
Sbjct: 43 CLEITPPLKSFSVLVGLIGVRFAARLQLFLIDLFGS 78



>Os11g0452400 Conserved hypothetical protein
          Length = 129

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/36 (91%), Positives = 34/36 (94%)

Query: 43  CLEITPPLKSFSVLVGLIGVRFAARLQLFLIDLFGS 78
           CLE TPPL+SFSVLVGLIGVRFAARLQLFLIDL GS
Sbjct: 93  CLETTPPLESFSVLVGLIGVRFAARLQLFLIDLLGS 128



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.337    0.154    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,097,558
Number of extensions: 17996
Number of successful extensions: 46
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 2
Length of query: 78
Length of database: 17,035,801
Length adjustment: 49
Effective length of query: 29
Effective length of database: 14,477,315
Effective search space: 419842135
Effective search space used: 419842135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 149 (62.0 bits)