BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0250700 Os08g0250700|AK109193
         (210 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0250700  Thioredoxin domain 2 containing protein             400   e-112
Os05g0255600  Thioredoxin domain 2 containing protein             117   5e-27
Os11g0604700  Thioredoxin domain 2 containing protein             115   3e-26

>Os08g0250700 Thioredoxin domain 2 containing protein
          Length = 210

 Score =  400 bits (1028), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/210 (94%), Positives = 198/210 (94%)

Query: 1   MDQSIVGQILEKQVLSVAKAVEDKLDEQIAALDRLDPDDIEALRERRILQMXXXXXXXXX 60
           MDQSIVGQILEKQVLSVAKAVEDKLDEQIAALDRLDPDDIEALRERRILQM         
Sbjct: 1   MDQSIVGQILEKQVLSVAKAVEDKLDEQIAALDRLDPDDIEALRERRILQMRRAAERRAK 60

Query: 61  XXXLGHGEYGEVPEKEFFAAAKASDRLVCHFYRDNWPCKVMDKHLSILAKQHVETRFVKV 120
              LGHGEYGEVPEKEFFAAAKASDRLVCHFYRDNWPCKVMDKHLSILAKQHVETRFVKV
Sbjct: 61  WRALGHGEYGEVPEKEFFAAAKASDRLVCHFYRDNWPCKVMDKHLSILAKQHVETRFVKV 120

Query: 121 HAEKAPFLTEKLRIVVLPTLALVKNTKVEDYVVGFDELGGKDDFSTEDLEERLAKAQVIF 180
           HAEKAPFLTEKLRIVVLPTLALVKNTKVEDYVVGFDELGGKDDFSTEDLEERLAKAQVIF
Sbjct: 121 HAEKAPFLTEKLRIVVLPTLALVKNTKVEDYVVGFDELGGKDDFSTEDLEERLAKAQVIF 180

Query: 181 LDGEGPAHASKQATKRSVRQSDTGNSSDSE 210
           LDGEGPAHASKQATKRSVRQSDTGNSSDSE
Sbjct: 181 LDGEGPAHASKQATKRSVRQSDTGNSSDSE 210



>Os05g0255600 Thioredoxin domain 2 containing protein
          Length = 230

 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 94/174 (54%), Gaps = 7/174 (4%)

Query: 8   QILEKQVLSVAKAVEDKLDEQIAALDRL-DPDDIEALRERRILQMXXXXXXXXXXXXLGH 66
           +I+ K+    A A  D++D     LD L D  ++E L   RI  +             GH
Sbjct: 29  EIVAKEKAQAASASHDEVD-----LDELLDDPELEKLHAERIAALKKEVEKREVLKRQGH 83

Query: 67  GEYGEVPEKEFFAAAKASDRLVCHFY-RDNWPCKVMDKHLSILAKQHVETRFVKVHAEKA 125
           GEY E+ E +F      S++++CHFY R+ + CK+MDKHL  LA  ++ T+F+K+ AE A
Sbjct: 84  GEYREITEGDFLGEVTGSEKVICHFYHREFYRCKIMDKHLKALAPIYLGTKFIKLDAENA 143

Query: 126 PFLTEKLRIVVLPTLALVKNTKVEDYVVGFDELGGKDDFSTEDLEERLAKAQVI 179
           PF   KL I  LP + L K     D ++GF +LG KDDFST  LE  L    +I
Sbjct: 144 PFFVTKLGIKTLPCVILFKKGIAADRLIGFQDLGSKDDFSTRALENILKMKGII 197



>Os11g0604700 Thioredoxin domain 2 containing protein
          Length = 177

 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 94/179 (52%), Gaps = 6/179 (3%)

Query: 36  DPDDIEALRERRILQMXXXXXXXXXXXXLGHGEYGEVPEKEFFAAAKASDRLVCHFY-RD 94
           DP+ +E L   RI  +             GHGEY E+ E +F      S++++CHFY R+
Sbjct: 1   DPE-LEKLHAERIAALKKEVEKREVLKRQGHGEYREITEGDFLGEVTGSEKVICHFYHRE 59

Query: 95  NWPCKVMDKHLSILAKQHVETRFVKVHAEKAPFLTEKLRIVVLPTLALVKNTKVEDYVVG 154
            + CK+MDKHL  LA  ++ T+F+K+ AE APF   KL I  LP + L K     D +VG
Sbjct: 60  FYRCKIMDKHLKTLAPVYLGTKFIKLDAENAPFFVTKLGIKTLPCVILFKKGIAVDRLVG 119

Query: 155 FDELGGKDDFSTEDLEERLAKAQVI---FLDGEGPAHASKQATKRSVRQSDTGNSSDSE 210
           F +LG KDDFST  LE  L    +I     D +     +  +  R +R S T   SDSE
Sbjct: 120 FQDLGSKDDFSTRALENILKMKGIIDEKKKDEDDEDDETDMSMNRRIRSS-TAQDSDSE 177



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,228,649
Number of extensions: 231887
Number of successful extensions: 608
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 3
Length of query: 210
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 114
Effective length of database: 12,023,257
Effective search space: 1370651298
Effective search space used: 1370651298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)