BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0233900 Os08g0233900|AK074006
(164 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0233900 Conserved hypothetical protein 238 1e-63
Os04g0362501 110 4e-25
Os04g0300175 Protein of unknown function DUF889, eukaryote ... 106 6e-24
Os07g0418100 Protein of unknown function DUF889, eukaryote ... 87 7e-18
Os01g0244200 Triosephosphate isomerase family protein 84 3e-17
Os10g0502800 81 3e-16
Os01g0556600 Protein of unknown function DUF889, eukaryote ... 80 8e-16
>Os08g0233900 Conserved hypothetical protein
Length = 164
Score = 238 bits (608), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/142 (80%), Positives = 115/142 (80%)
Query: 23 HCQLPLVSYLWEMGSDXXXXXXXXXXXXXXEHSGQRGCRFFWCVAFEPYETAHEPAAREA 82
HCQLPLVSYLWEMGSD EHSGQRGCRFFWCVAFEPYETAHEPAAREA
Sbjct: 23 HCQLPLVSYLWEMGSDGVLLAGVELVLVSGEHSGQRGCRFFWCVAFEPYETAHEPAAREA 82
Query: 83 VRFLQSIYGFVVHDYNFRYMVSYREXXXXXXXXXXXXXTCLAHMRAPHDLHCFRFESLFR 142
VRFLQSIYGFVVHDYNFRYMVSYRE TCLAHMRAPHDLHCFRFESLFR
Sbjct: 83 VRFLQSIYGFVVHDYNFRYMVSYREIAASAIDLAIAASTCLAHMRAPHDLHCFRFESLFR 142
Query: 143 EFCSVWFAFVAEEHNLNHFGWM 164
EFCSVWFAFVAEEHNLNHFGWM
Sbjct: 143 EFCSVWFAFVAEEHNLNHFGWM 164
>Os04g0362501
Length = 257
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 53/70 (75%)
Query: 35 MGSDXXXXXXXXXXXXXXEHSGQRGCRFFWCVAFEPYETAHEPAAREAVRFLQSIYGFVV 94
MGSD EH GQRGCRFFWCV FEPYETAHEPAAREAV FLQSIYGFVV
Sbjct: 1 MGSDGVLLAGVELVLVSGEHLGQRGCRFFWCVPFEPYETAHEPAAREAVGFLQSIYGFVV 60
Query: 95 HDYNFRYMVS 104
HDYNFRYM++
Sbjct: 61 HDYNFRYMLT 70
>Os04g0300175 Protein of unknown function DUF889, eukaryote family protein
Length = 1718
Score = 106 bits (265), Expect = 6e-24, Method: Composition-based stats.
Identities = 50/108 (46%), Positives = 58/108 (53%)
Query: 23 HCQLPLVSYLWEMGSDXXXXXXXXXXXXXXEHSGQRGCRFFWCVAFEPYETAHEPAAREA 82
HC + VSYLWE+G+D G CRFFW VA EPY+ +HE AA EA
Sbjct: 28 HCGVSFVSYLWELGNDGTLLAGVELLLPCAGFPGNAECRFFWVVASEPYDMSHEIAASEA 87
Query: 83 VRFLQSIYGFVVHDYNFRYMVSYREXXXXXXXXXXXXXTCLAHMRAPH 130
+RFLQS YGFVV DYN+ MV+YR CLA R PH
Sbjct: 88 LRFLQSKYGFVVQDYNYASMVTYRRMAMKAIDLALSASACLAQFRVPH 135
>Os07g0418100 Protein of unknown function DUF889, eukaryote family protein
Length = 2266
Score = 86.7 bits (213), Expect = 7e-18, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 50/85 (58%)
Query: 23 HCQLPLVSYLWEMGSDXXXXXXXXXXXXXXEHSGQRGCRFFWCVAFEPYETAHEPAAREA 82
HCQLP+VSYLWE+ D + +FFW A +P +HE A++A
Sbjct: 18 HCQLPMVSYLWELDGDGMLLAGVELVLPAEDLGKSSARKFFWVAATDPLIVSHEMVAQQA 77
Query: 83 VRFLQSIYGFVVHDYNFRYMVSYRE 107
VRFLQ+ YGF +HDYNF ++SYR+
Sbjct: 78 VRFLQAKYGFTIHDYNFEMLLSYRK 102
>Os01g0244200 Triosephosphate isomerase family protein
Length = 2498
Score = 84.3 bits (207), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 50/84 (59%)
Query: 23 HCQLPLVSYLWEMGSDXXXXXXXXXXXXXXEHSGQRGCRFFWCVAFEPYETAHEPAAREA 82
HCQLPLVSYLWE+ + + +GQ +FFW A +HE A +A
Sbjct: 18 HCQLPLVSYLWEIDGNGMLLAGVELALPSEDMAGQIVSKFFWVCASTQTSDSHEMGAHQA 77
Query: 83 VRFLQSIYGFVVHDYNFRYMVSYR 106
VRFLQ+ YGF+VHDYN + ++SYR
Sbjct: 78 VRFLQARYGFIVHDYNLQMLLSYR 101
>Os10g0502800
Length = 1077
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%)
Query: 23 HCQLPLVSYLWEMGSDXXXXXXXXXXXXXXEHSGQRGCRFFWCVAFEPYETAHEPAAREA 82
HCQLPLVSYLWE+ + + +GQ +FFW A +HE A +A
Sbjct: 18 HCQLPLVSYLWEIDGNGMLLAGVELALPSEDMAGQIVSKFFWVCASTQTSDSHEMVAHQA 77
Query: 83 VRFLQSIYGFVVHDYNFRYMVSYR 106
VRFLQ+ YGF+VHDYN + ++SYR
Sbjct: 78 VRFLQARYGFIVHDYNLQMLLSYR 101
>Os01g0556600 Protein of unknown function DUF889, eukaryote family protein
Length = 1932
Score = 79.7 bits (195), Expect = 8e-16, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 23 HCQLPLVSYLWEM-GSDXXXXXXXXXXXXXXEHSGQR------GCRFFWCVAFEPYETAH 75
HC+LPLVSYLWE+ G SGQ +FFW A +P +H
Sbjct: 66 HCRLPLVSYLWELDGHGTLLAGVELILPPEDPASGQAHPSNNLARKFFWVAATDPLIVSH 125
Query: 76 EPAAREAVRFLQSIYGFVVHDYNFRYMVSYREXXXXXXXXXXXXXTCLAHMRAPH---DL 132
E A++ VRF+Q+ Y F VHDYNF ++SYR+ +CLA +++ + DL
Sbjct: 126 EMVAQQVVRFMQAKYRFAVHDYNFHMLLSYRKIASSAVDAALTAASCLARLQSRYGALDL 185
Query: 133 HC 134
C
Sbjct: 186 PC 187
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.332 0.141 0.511
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,110,299
Number of extensions: 121220
Number of successful extensions: 195
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 7
Length of query: 164
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 71
Effective length of database: 12,179,899
Effective search space: 864772829
Effective search space used: 864772829
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 152 (63.2 bits)