Os08g0233900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0233900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 244.81 | 0.735 | 3.28 | 0.202 | 0.278 | -0.621 | 1.51 | -1.57 | -0.297 | 14.3 | 1014 | 3760 | -- | -- |
| 252.68 | 0.74 | 3.27 | 0.444 | 0.267 | -0.737 | 1.65 | -- | -0.251 | 14.4 | 1014 | 4001 | -- | -- |
| 252.68 | 0.74 | 3.28 | 0.245 | 0.285 | -0.628 | -- | -1.62 | -0.287 | 13 | 1014 | 3739 | -- | -- |
| 261.12 | 0.753 | 3.27 | 0.463 | 0.286 | -0.826 | -- | -- | -0.252 | 12.9 | 1014 | 3362 | -- | -- |
| 257.86 | 0.748 | 3.28 | 0.226 | -- | -0.627 | -- | -1.63 | -0.298 | -- | 1014 | 3756 | -- | -- |
| 266.86 | 0.766 | 3.29 | 0.444 | 0.289 | -- | 1.61 | -- | -0.327 | 14.6 | -- | -- | -- | -- |
| 275.44 | 0.777 | 3.28 | 0.484 | 0.302 | -- | -- | -- | -0.319 | 13.3 | -- | -- | -- | -- |
| 266.26 | 0.76 | 3.27 | 0.451 | -- | -0.834 | -- | -- | -0.255 | -- | 1014 | 3401 | -- | -- |
| 266.77 | 0.761 | 3.27 | -- | 0.279 | -0.844 | -- | -- | -0.282 | 12.8 | 1014 | 3400 | -- | -- |
| 281.06 | 0.783 | 3.29 | 0.472 | -- | -- | -- | -- | -0.325 | -- | -- | -- | -- | -- |
| 281.62 | 0.785 | 3.29 | -- | 0.293 | -- | -- | -- | -0.373 | 13.2 | -- | -- | -- | -- |
| 271.61 | 0.768 | 3.28 | -- | -- | -0.844 | -- | -- | -0.303 | -- | 1014 | 3426 | -- | -- |
| 286.95 | 0.791 | 3.3 | -- | -- | -- | -- | -- | -0.377 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 243.33 | humidity | 50 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 3 | 243.40 | humidity | 90 | 4320 | < th | dose dependent | rect. | 7 | 3 |
| 13 | 243.82 | humidity | 70 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 20 | 244.18 | humidity | 70 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 22 | 244.25 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 39 | 244.33 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 43 | 244.35 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 68 | 244.71 | humidity | 70 | 4320 | > th | dose independent | rect. | 22 | 11 |
| 72 | 244.73 | humidity | 70 | 4320 | > th | dose independent | rect. | 5 | 4 |
| 77 | 244.74 | humidity | 70 | 4320 | > th | dose independent | rect. | 2 | 7 |
| 100 | 244.84 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 5 | 5 |
| 118 | 245.00 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 5 | 5 |
| 233 | 245.41 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 4 | NA |
| 256 | 245.46 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 24 | 11 |
| 260 | 245.47 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 24 | 11 |
| 273 | 245.48 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 8 | 14 |
| 303 | 245.52 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 4 | 18 |
| 353 | 245.57 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 4 | 18 |
| 356 | 245.57 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 8 | 12 |
| 359 | 245.58 | atmosphere | 1015 | 4320 | > th | dose independent | sin | 4 | NA |
| 362 | 245.58 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 4 | 18 |
| 374 | 245.59 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 4 | NA |
| 379 | 245.59 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 24 | 22 |
| 409 | 245.62 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 24 | 22 |
| 513 | 245.72 | humidity | 50 | 4320 | < th | dose dependent | rect. | 10 | 4 |
| 542 | 245.73 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 4 | 22 |
| 550 | 245.74 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 601 | 245.77 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 21 | 16 |
| 608 | 245.77 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 4 | 22 |
| 612 | 245.77 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 8 | 18 |
| 647 | 245.79 | humidity | 50 | 4320 | < th | dose independent | rect. | 10 | 4 |
| 667 | 245.79 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 8 | 22 |
| 671 | 245.79 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 732 | 245.81 | atmosphere | 1015 | 4320 | > th | dose dependent | no | NA | NA |
| 748 | 245.82 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 4 | 22 |
| 809 | 245.85 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 12 | 22 |
| 821 | 245.86 | atmosphere | 1015 | 4320 | < th | dose independent | no | NA | NA |
| 891 | 245.89 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 7 | 23 |
| 940 | 245.93 | atmosphere | 1015 | 4320 | > th | dose independent | no | NA | NA |
| 949 | 245.93 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 11 | 23 |
| 982 | 245.96 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 7 | 23 |
| 989 | 245.97 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 14 | 7 |