Os01g0244200 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0244200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Triosephosphate isomerase family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.36	(0.0259)	R²	:	0.002
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	--	(--)	R²_dE	:	--	R²_E	:	--
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.0523	(0.0546)	R²_dN8	:	0.00259	R²_N8	:	0.002
σ	:	0.488
deviance	:	109.46
__

_____

C
peak time of C	:	--
E
wheather	:	--
threshold	:	--
memory length	:	--
response mode	:	--
dose dependency	:	--
G
type of G	:	--
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
99.38	0.468	3.32	0.297	0.155	-4.45	-0.192	44.6	-0.0463	4.22	34.32	59	--	--
100.1	0.47	3.36	0.00253	0.156	2.77	-0.209	--	-0.0451	4.13	34.32	59	--	--
98.31	0.462	3.34	0.182	0.155	-4.51	--	46.4	-0.0384	4.26	35.09	64	--	--
100.22	0.469	3.36	0.00485	0.157	2.78	--	--	-0.044	4.37	34.32	59	--	--
99.51	0.465	3.34	0.2	--	-5.47	--	52.3	-0.0405	--	35.1	64	--	--
108.38	0.488	3.36	0.0206	0.124	--	-0.293	--	-0.0539	4.15	--	--	--	--
108.6	0.488	3.36	0.024	0.126	--	--	--	-0.0523	4.76	--	--	--	--
101.53	0.471	3.36	0.0116	--	2.69	--	--	-0.0401	--	34.32	59	--	--
100.22	0.469	3.36	--	0.157	2.78	--	--	-0.0445	4.37	34.32	59	--	--
109.44	0.489	3.36	0.0288	--	--	--	--	-0.0491	--	--	--	--	--
108.62	0.488	3.36	--	0.126	--	--	--	-0.055	4.76	--	--	--	--
101.53	0.471	3.36	--	--	2.7	--	--	-0.0414	--	34.32	59	--	--
109.46	0.488	3.36	--	--	--	--	--	-0.0523	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	94.06	temperature	25.0	30	< th	dose independent	rect.	2	1
2	94.10	wind	3.0	30	< th	dose dependent	rect.	2	1
6	94.11	atmosphere	1005.0	30	> th	dose dependent	rect.	2	1
7	94.12	wind	3.0	30	< th	dose independent	rect.	2	1
8	94.13	temperature	10.0	30	> th	dose dependent	rect.	2	1
9	94.14	wind	9.0	30	< th	dose independent	rect.	2	1
10	94.14	temperature	10.0	30	> th	dose independent	rect.	2	1
13	94.14	humidity	50.0	30	> th	dose independent	rect.	2	1
16	94.14	atmosphere	995.0	30	> th	dose independent	rect.	2	1
17	94.14	atmosphere	1010.0	30	< th	dose independent	rect.	2	1
19	94.14	radiation	1.0	30	< th	dose independent	rect.	2	1
24	94.14	precipitation	0.1	30	< th	dose independent	rect.	2	1
25	94.14	temperature	10.0	30	> th	dose independent	rect.	3	23
26	94.14	radiation	1.0	30	< th	dose dependent	rect.	2	1
31	94.14	precipitation	0.1	30	< th	dose dependent	rect.	2	1
35	94.16	atmosphere	1015.0	30	< th	dose dependent	rect.	2	1
36	94.18	humidity	50.0	30	> th	dose dependent	rect.	2	1
41	94.24	atmosphere	995.0	30	> th	dose dependent	rect.	2	1
46	94.34	atmosphere	1005.0	30	> th	dose independent	rect.	2	1
47	94.35	temperature	30.0	30	< th	dose dependent	rect.	2	1
53	94.97	wind	9.0	30	< th	dose independent	rect.	3	23
56	95.00	wind	1.0	30	> th	dose independent	rect.	2	1
107	97.31	atmosphere	1000.0	720	> th	dose independent	rect.	23	16
108	98.01	atmosphere	1000.0	30	> th	dose independent	rect.	3	23
109	98.18	atmosphere	1000.0	90	< th	dose independent	rect.	12	1
110	98.25	atmosphere	1000.0	90	< th	dose dependent	rect.	12	1
111	98.26	atmosphere	1000.0	10	< th	dose dependent	rect.	12	2
112	98.26	atmosphere	1000.0	90	< th	dose dependent	rect.	11	4
124	98.54	humidity	50.0	90	< th	dose dependent	rect.	13	2
126	98.55	humidity	50.0	90	< th	dose independent	rect.	13	2
129	98.59	atmosphere	1000.0	720	> th	dose independent	rect.	3	8
132	98.65	atmosphere	1000.0	270	< th	dose dependent	rect.	9	5
134	98.78	atmosphere	1000.0	270	< th	dose independent	rect.	9	5
136	98.94	atmosphere	1000.0	720	< th	dose independent	rect.	3	11
141	99.05	atmosphere	1000.0	10	< th	dose dependent	rect.	10	5
144	99.08	atmosphere	1000.0	270	< th	dose independent	rect.	10	3
165	99.48	atmosphere	1000.0	720	> th	dose independent	rect.	7	8
173	99.66	atmosphere	1000.0	720	< th	dose independent	sin	5	NA
181	99.76	atmosphere	1000.0	10	< th	dose dependent	rect.	8	7
183	99.80	atmosphere	1000.0	720	> th	dose independent	sin	5	NA
198	100.10	atmosphere	1000.0	720	> th	dose independent	rect.	21	18
231	100.49	atmosphere	1000.0	720	> th	dose independent	rect.	3	15
243	100.63	humidity	80.0	14400	< th	dose dependent	rect.	1	8
245	100.64	atmosphere	1000.0	720	> th	dose independent	rect.	3	23
265	100.87	precipitation	0.1	30	< th	dose independent	rect.	3	23
266	100.87	precipitation	0.1	30	< th	dose dependent	rect.	3	23
281	100.98	atmosphere	1000.0	10	< th	dose dependent	sin	0	NA
290	101.07	temperature	30.0	90	> th	dose dependent	rect.	12	3
309	101.22	temperature	30.0	90	> th	dose dependent	rect.	13	1
323	101.29	atmosphere	1000.0	720	> th	dose independent	rect.	21	23
343	101.34	atmosphere	1000.0	720	> th	dose independent	rect.	13	22
362	101.44	atmosphere	1000.0	720	> th	dose independent	rect.	17	16
373	101.47	atmosphere	1000.0	720	> th	dose independent	rect.	16	23
477	101.82	atmosphere	1000.0	720	> th	dose independent	rect.	13	20
480	101.83	atmosphere	1000.0	720	> th	dose independent	rect.	3	12
497	101.86	temperature	30.0	270	> th	dose dependent	sin	8	NA
515	101.92	atmosphere	1000.0	720	< th	dose independent	no	NA	NA
522	101.94	atmosphere	1000.0	720	> th	dose independent	rect.	19	23
545	102.01	atmosphere	1000.0	720	> th	dose independent	rect.	10	23
549	102.02	atmosphere	1000.0	720	> th	dose independent	no	NA	NA
552	102.03	temperature	30.0	270	> th	dose dependent	rect.	17	21
557	102.04	temperature	30.0	270	> th	dose dependent	rect.	8	6
586	102.07	atmosphere	1000.0	720	< th	dose independent	rect.	11	23
598	102.10	atmosphere	1000.0	720	< th	dose independent	rect.	9	23
601	102.10	atmosphere	1000.0	720	< th	dose dependent	sin	4	NA
652	102.18	atmosphere	1000.0	720	> th	dose independent	rect.	23	23
660	102.19	temperature	30.0	30	> th	dose dependent	rect.	13	22
661	102.20	wind	9.0	4320	< th	dose independent	rect.	3	1
683	102.26	atmosphere	1000.0	720	> th	dose independent	rect.	3	19
693	102.27	humidity	80.0	14400	< th	dose dependent	rect.	7	1
705	102.30	temperature	30.0	90	> th	dose dependent	rect.	16	23
718	102.33	atmosphere	995.0	30	> th	dose dependent	rect.	3	23
736	102.37	atmosphere	1000.0	720	> th	dose independent	rect.	6	23
744	102.39	wind	5.0	14400	< th	dose independent	rect.	10	5
816	102.48	temperature	30.0	30	> th	dose dependent	rect.	13	6
855	102.54	wind	5.0	14400	> th	dose independent	rect.	10	5
864	102.56	wind	5.0	14400	< th	dose dependent	rect.	10	2
865	102.56	atmosphere	1000.0	10	< th	dose dependent	rect.	1	14
869	102.57	temperature	30.0	270	> th	dose dependent	rect.	9	2
921	102.63	radiation	1.0	43200	< th	dose dependent	rect.	3	1
925	102.64	humidity	50.0	720	> th	dose independent	rect.	23	16
955	102.67	temperature	10.0	1440	> th	dose independent	rect.	3	1
958	102.67	temperature	30.0	1440	< th	dose independent	rect.	3	1
962	102.67	humidity	50.0	1440	> th	dose independent	rect.	3	1
971	102.67	atmosphere	995.0	1440	> th	dose independent	rect.	3	1
972	102.67	radiation	1.0	1440	< th	dose independent	rect.	3	1
994	102.67	temperature	10.0	1440	> th	dose independent	rect.	4	23
997	102.67	radiation	1.0	1440	< th	dose dependent	rect.	3	1