BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0230600 Os08g0230600|AK111371
         (81 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0230600  LIM, zinc-binding domain containing protein         148   9e-37
Os04g0606200  Conserved hypothetical protein                       96   6e-21
Os02g0463300                                                       69   7e-13
Os06g0660400  Conserved hypothetical protein                       68   2e-12

>Os08g0230600 LIM, zinc-binding domain containing protein
          Length = 81

 Score =  148 bits (373), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 75/75 (100%), Positives = 75/75 (100%)

Query: 1  MAMVEAARRAMGWCGAEEERETASRKAPGACPRCGGAVVATDVESSRRILCLPLCLRNKK 60
          MAMVEAARRAMGWCGAEEERETASRKAPGACPRCGGAVVATDVESSRRILCLPLCLRNKK
Sbjct: 1  MAMVEAARRAMGWCGAEEERETASRKAPGACPRCGGAVVATDVESSRRILCLPLCLRNKK 60

Query: 61 KFSCSRCRRALVAIV 75
          KFSCSRCRRALVAIV
Sbjct: 61 KFSCSRCRRALVAIV 75



>Os04g0606200 Conserved hypothetical protein
          Length = 71

 Score = 95.9 bits (237), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 52/62 (83%)

Query: 13 WCGAEEERETASRKAPGACPRCGGAVVATDVESSRRILCLPLCLRNKKKFSCSRCRRALV 72
           CGA EER   + KAPGACPRCGGAVVATDVES RRILCLPLC+++K+K+SCSRC R LV
Sbjct: 8  MCGAAEERVVGTHKAPGACPRCGGAVVATDVESERRILCLPLCVKSKRKYSCSRCLRRLV 67

Query: 73 AI 74
           +
Sbjct: 68 TL 69



>Os02g0463300 
          Length = 67

 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 42/58 (72%)

Query: 17 EEERETASRKAPGACPRCGGAVVATDVESSRRILCLPLCLRNKKKFSCSRCRRALVAI 74
          E ER  A+ +APG CP CGG VVATDVES+ R+  LPLC R +++F CS C R LV++
Sbjct: 9  EPERVVATYQAPGRCPYCGGGVVATDVESAPRLCFLPLCFRLRRRFFCSLCSRRLVSV 66



>Os06g0660400 Conserved hypothetical protein
          Length = 68

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 41/59 (69%)

Query: 16 AEEERETASRKAPGACPRCGGAVVATDVESSRRILCLPLCLRNKKKFSCSRCRRALVAI 74
           +EE+    +KAPG+CP CGG V ATDVE+   +  LPLCL NK++FSC+ C R LV+ 
Sbjct: 4  GKEEKLLGVQKAPGSCPYCGGGVAATDVEAKWVLCFLPLCLNNKRRFSCTACNRRLVSY 62



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.133    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,557,035
Number of extensions: 83221
Number of successful extensions: 490
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 4
Length of query: 81
Length of database: 17,035,801
Length adjustment: 51
Effective length of query: 30
Effective length of database: 14,372,887
Effective search space: 431186610
Effective search space used: 431186610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)