Os04g0606200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0606200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 738.7 | 1.28 | 8.16 | -2.9 | 3.69 | 3.38 | 0.187 | -0.638 | 0.735 | 20.2 | 20.1 | 275 | 13 | 15 |
| 739.72 | 1.27 | 8.14 | -2.81 | 3.68 | 3.4 | -0.273 | -- | 0.754 | 20.2 | 20.1 | 277 | 13 | 15 |
| 738.7 | 1.27 | 8.16 | -2.89 | 3.69 | 3.39 | -- | -0.542 | 0.738 | 20.2 | 20.09 | 277 | 13 | 15 |
| 740.06 | 1.27 | 8.14 | -2.82 | 3.66 | 3.42 | -- | -- | 0.755 | 20.2 | 20.1 | 277 | 13 | 15 |
| 834.7 | 1.35 | 8.03 | -3.11 | -- | 5.67 | -- | 0.428 | 0.748 | -- | 19.36 | 263 | 12.8 | 13.6 |
| 1078.05 | 1.54 | 8.14 | -2.01 | 6.6 | -- | 1.11 | -- | 1.16 | 21.3 | -- | -- | -- | -- |
| 1082.5 | 1.54 | 8.14 | -2.05 | 6.6 | -- | -- | -- | 1.16 | 21.3 | -- | -- | -- | -- |
| 833.43 | 1.34 | 8.05 | -3.22 | -- | 5.73 | -- | -- | 0.701 | -- | 19.3 | 268 | 12.8 | 13.6 |
| 933.65 | 1.42 | 8.11 | -- | 4.24 | 3.08 | -- | -- | 0.976 | 20.2 | 20.31 | 339 | 12.8 | 15.2 |
| 3617.88 | 2.81 | 7.96 | -2.02 | -- | -- | -- | -- | 1.14 | -- | -- | -- | -- | -- |
| 1193.17 | 1.62 | 8.08 | -- | 6.6 | -- | -- | -- | 1.39 | 21.3 | -- | -- | -- | -- |
| 1101.89 | 1.55 | 7.86 | -- | -- | 5.5 | -- | -- | 1.16 | -- | 19.3 | 320 | 12.3 | 13.2 |
| 3725.53 | 2.85 | 7.91 | -- | -- | -- | -- | -- | 1.36 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 739.15 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 15 |
| 6 | 759.90 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 10 |
| 11 | 763.61 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 21 |
| 18 | 769.70 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 21 |
| 96 | 820.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 103 | 824.25 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 18 |
| 108 | 825.85 | temperature | 20 | 270 | > th | dose independent | sin | 12 | NA |
| 114 | 826.62 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 117 | 827.58 | temperature | 20 | 270 | < th | dose independent | sin | 12 | NA |
| 128 | 828.37 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 10 |
| 134 | 829.05 | temperature | 20 | 90 | > th | dose independent | rect. | 1 | 18 |
| 153 | 831.20 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 5 |
| 215 | 837.83 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 234 | 839.68 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 250 | 841.39 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 4 |
| 258 | 841.74 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 7 |
| 288 | 843.72 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 290 | 843.93 | temperature | 20 | 720 | < th | dose independent | rect. | 17 | 10 |
| 347 | 847.05 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 379 | 848.09 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 18 |
| 388 | 848.50 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 9 |
| 393 | 848.64 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 23 |
| 418 | 849.54 | wind | 9 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 420 | 849.59 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 439 | 850.14 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 496 | 852.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 500 | 852.30 | temperature | 25 | 270 | < th | dose dependent | sin | 14 | NA |
| 513 | 852.55 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 514 | 852.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 579 | 854.09 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 586 | 854.30 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 19 |
| 603 | 854.57 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 15 |
| 625 | 855.07 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 720 | 857.20 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 23 |
| 729 | 857.35 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 10 |
| 743 | 857.67 | wind | 3 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 770 | 858.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 789 | 858.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 862 | 859.57 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 23 |
| 894 | 860.07 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 938 | 860.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 967 | 861.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 992 | 861.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |