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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0230600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : LIM, zinc-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.68 (0.0389) R2 : 0.742
β1 : 1.25 (0.141) R2dD : 0.0458 R2D : 0.0374
β2 : 1.55 (0.217) R2dC : 0.164 R2C : 0.486
β3 : 1.4 (0.179) R2dE : 0.195 R2E : 0.516
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.493 (0.0826) R2dN8 : 0.0272 R2N8 : 0.00729
σ : 0.721
deviance : 239.66
__
_____
C
peak time of C : 0.299
E
wheather : radiation
threshold : 12.51
memory length : 12
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
229.04 0.711 4.67 1.3 1.55 1.4 1.39 0.185 0.503 0.409 11.64 12 -- --
229.07 0.705 4.67 1.3 1.54 1.41 1.59 -- 0.504 0.426 11.58 12 -- --
230.45 0.707 4.68 1.27 1.59 1.38 -- 1.18 0.48 0.354 12.24 11 -- --
239.66 0.721 4.68 1.25 1.55 1.4 -- -- 0.493 0.299 12.51 12 -- --
260.36 0.752 4.65 1.28 -- 2.53 -- 1.17 0.524 -- 10.95 9 -- --
259.38 0.755 4.72 1.31 3.1 -- 1.6 -- 0.447 0.119 -- -- -- --
270.48 0.77 4.72 1.24 3.1 -- -- -- 0.44 0.0907 -- -- -- --
266.16 0.76 4.64 1.25 -- 2.55 -- -- 0.551 -- 11.61 12 -- --
280 0.779 4.71 -- 1.57 1.38 -- -- 0.37 0.398 10.63 12 -- --
873.94 1.38 4.66 1.34 -- -- -- -- 0.485 -- -- -- -- --
311.23 0.825 4.75 -- 3.11 -- -- -- 0.302 0.113 -- -- -- --
306.46 0.815 4.67 -- -- 2.54 -- -- 0.423 -- 10.64 12 -- --
921.42 1.42 4.69 -- -- -- -- -- 0.336 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 220.43 temperature 10.0 720 > th dose dependent rect. 17 2
3 221.55 temperature 25.0 720 > th dose dependent rect. 17 2
5 222.13 radiation 1.0 90 < th dose dependent sin 2 NA
6 222.38 radiation 10.0 10 < th dose dependent rect. 3 8
8 222.81 radiation 1.0 90 < th dose dependent rect. 3 16
10 223.13 radiation 10.0 10 < th dose dependent rect. 3 11
16 223.49 radiation 1.0 90 < th dose independent rect. 3 16
20 223.77 radiation 1.0 90 < th dose independent rect. 3 14
22 223.79 radiation 1.0 90 < th dose dependent rect. 3 14
23 223.84 radiation 1.0 90 < th dose independent sin 2 NA
25 223.88 temperature 10.0 720 > th dose dependent rect. 16 12
26 223.94 radiation 1.0 90 < th dose independent rect. 3 12
28 223.97 radiation 1.0 90 < th dose independent rect. 3 5
41 224.28 radiation 1.0 90 < th dose dependent rect. 3 5
65 225.17 radiation 10.0 10 < th dose dependent sin 3 NA
74 225.73 temperature 30.0 720 < th dose independent rect. 18 15
76 225.81 radiation 1.0 720 > th dose independent rect. 17 2
86 225.83 precipitation 0.1 270 < th dose independent rect. 15 13
87 225.83 precipitation 0.1 270 < th dose dependent rect. 15 13
110 226.40 precipitation 0.1 270 < th dose independent rect. 4 11
111 226.40 precipitation 0.1 270 < th dose dependent rect. 4 11
119 226.63 temperature 10.0 90 > th dose dependent rect. 3 2
121 226.64 precipitation 0.1 90 < th dose independent rect. 3 2
122 226.64 precipitation 0.1 90 < th dose dependent rect. 3 2
147 226.89 radiation 10.0 10 < th dose dependent rect. 3 18
154 226.98 humidity 70.0 720 > th dose independent rect. 19 13
155 226.99 humidity 70.0 720 > th dose independent rect. 19 5
160 227.03 temperature 15.0 270 > th dose dependent rect. 24 5
166 227.11 radiation 1.0 720 > th dose dependent rect. 17 12
167 227.15 radiation 40.0 270 < th dose independent rect. 15 13
172 227.21 radiation 1.0 720 > th dose dependent rect. 17 2
182 227.23 temperature 10.0 90 > th dose dependent rect. 17 12
184 227.27 wind 3.0 90 < th dose independent rect. 3 2
186 227.28 wind 9.0 270 < th dose independent rect. 15 13
188 227.31 wind 9.0 90 < th dose independent rect. 3 2
189 227.31 temperature 10.0 90 > th dose independent rect. 3 2
191 227.31 temperature 30.0 90 < th dose independent rect. 3 2
192 227.31 humidity 50.0 90 > th dose independent rect. 3 2
195 227.31 atmosphere 995.0 90 > th dose independent rect. 3 2
196 227.31 atmosphere 1010.0 90 < th dose independent rect. 3 2
198 227.31 radiation 1.0 90 < th dose independent rect. 3 2
203 227.31 temperature 10.0 90 > th dose independent rect. 5 22
207 227.32 wind 9.0 90 < th dose dependent rect. 3 2
211 227.40 temperature 15.0 270 > th dose independent rect. 4 11
214 227.46 wind 9.0 90 < th dose independent rect. 5 22
222 227.63 radiation 10.0 10 < th dose independent rect. 3 8
235 227.73 temperature 30.0 720 < th dose independent rect. 17 7
239 227.76 atmosphere 1015.0 270 < th dose independent rect. 4 11
240 227.76 temperature 10.0 270 > th dose independent rect. 15 13
243 227.80 radiation 10.0 10 < th dose dependent rect. 16 18
252 227.87 temperature 10.0 270 > th dose dependent rect. 1 3
260 227.95 wind 9.0 270 < th dose independent rect. 4 11
266 227.98 temperature 25.0 720 > th dose dependent rect. 16 17
283 228.14 radiation 1.0 90 > th dose independent sin 1 NA
287 228.17 humidity 50.0 90 > th dose dependent rect. 3 2
299 228.29 radiation 10.0 10 < th dose dependent rect. 16 22
306 228.41 radiation 10.0 10 < th dose dependent rect. 3 23
318 228.57 radiation 1.0 90 > th dose independent rect. 6 11
321 228.58 atmosphere 995.0 90 > th dose dependent rect. 3 2
328 228.68 radiation 10.0 10 < th dose dependent rect. 13 22
331 228.71 temperature 30.0 720 > th dose independent rect. 17 16
342 228.85 radiation 1.0 90 > th dose independent rect. 4 13
378 229.15 temperature 30.0 720 > th dose independent rect. 17 2
397 229.20 radiation 1.0 720 < th dose independent rect. 17 7
425 229.48 wind 5.0 270 < th dose independent rect. 24 4
429 229.49 radiation 10.0 10 < th dose independent rect. 3 5
433 229.51 radiation 10.0 10 < th dose dependent rect. 9 23
436 229.55 wind 9.0 270 < th dose dependent rect. 1 2
451 229.56 radiation 10.0 10 < th dose dependent no NA NA
453 229.57 temperature 30.0 1440 < th dose independent rect. 18 5
479 229.71 temperature 10.0 10 > th dose dependent rect. 3 3
487 229.76 radiation 1.0 720 < th dose dependent rect. 17 7
502 229.89 wind 7.0 270 < th dose dependent rect. 24 4
532 230.10 radiation 40.0 1440 < th dose dependent rect. 18 9
540 230.17 temperature 30.0 720 < th dose independent sin 12 NA
551 230.21 radiation 10.0 10 < th dose dependent rect. 16 16
561 230.27 temperature 10.0 720 > th dose dependent rect. 16 20
573 230.36 temperature 15.0 10 > th dose independent rect. 6 21
595 230.46 temperature 10.0 10 > th dose dependent rect. 2 5
600 230.49 radiation 30.0 1440 < th dose dependent rect. 18 7
602 230.51 precipitation 0.1 270 < th dose independent rect. 1 2
604 230.51 precipitation 0.1 270 < th dose dependent rect. 1 2
605 230.55 humidity 70.0 270 > th dose independent rect. 16 8
623 230.63 precipitation 0.1 10 < th dose independent rect. 3 3
624 230.63 precipitation 0.1 10 < th dose dependent rect. 3 3
626 230.63 humidity 60.0 720 < th dose dependent rect. 17 16
627 230.64 wind 9.0 270 < th dose independent rect. 1 2
628 230.64 temperature 10.0 270 > th dose independent rect. 1 2
630 230.64 temperature 30.0 270 < th dose independent rect. 1 2
631 230.64 humidity 50.0 270 > th dose independent rect. 1 2
634 230.64 atmosphere 995.0 270 > th dose independent rect. 1 2
635 230.64 atmosphere 1010.0 270 < th dose independent rect. 1 2
637 230.64 radiation 1.0 270 < th dose independent rect. 1 2
642 230.64 temperature 10.0 270 > th dose independent rect. 3 22
644 230.64 radiation 1.0 270 < th dose dependent rect. 1 2
656 230.67 wind 9.0 10 < th dose dependent rect. 3 3
658 230.70 wind 1.0 720 > th dose independent rect. 17 2
701 230.82 radiation 10.0 10 < th dose independent rect. 3 3
702 230.82 temperature 25.0 720 > th dose dependent sin 13 NA
708 230.84 humidity 60.0 720 < th dose dependent rect. 17 2
709 230.85 wind 9.0 270 < th dose independent rect. 3 22
723 230.86 temperature 30.0 1440 < th dose independent rect. 18 12
737 230.91 humidity 90.0 720 < th dose dependent rect. 17 2
747 230.95 wind 9.0 10 < th dose independent rect. 3 3
748 230.95 temperature 10.0 10 > th dose independent rect. 3 3
750 230.95 temperature 30.0 10 < th dose independent rect. 3 3
751 230.95 humidity 50.0 10 > th dose independent rect. 3 3
754 230.95 atmosphere 995.0 10 > th dose independent rect. 3 3
755 230.95 atmosphere 1010.0 10 < th dose independent rect. 3 3
770 230.97 wind 9.0 10 < th dose independent rect. 6 21
782 231.02 atmosphere 995.0 270 > th dose independent rect. 4 11
790 231.03 radiation 1.0 270 < th dose dependent rect. 8 16
817 231.13 radiation 10.0 10 < th dose dependent rect. 7 23
932 231.36 radiation 1.0 270 < th dose dependent rect. 5 19
934 231.37 radiation 10.0 10 < th dose dependent rect. 24 22
946 231.42 radiation 10.0 10 < th dose independent rect. 3 18
950 231.43 radiation 20.0 10 < th dose dependent rect. 24 11
957 231.46 atmosphere 1015.0 270 < th dose independent rect. 24 11
958 231.46 radiation 1.0 270 < th dose dependent rect. 12 12
972 231.49 temperature 10.0 270 > th dose independent rect. 24 11
973 231.49 atmosphere 995.0 270 > th dose independent rect. 24 11
974 231.49 temperature 10.0 270 > th dose independent rect. 11 13