BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0192200 Os08g0192200|AK064428
         (145 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0192200  Hypothetical protein                                251   2e-67
Os07g0213400  Conserved hypothetical protein                      184   2e-47

>Os08g0192200 Hypothetical protein
          Length = 145

 Score =  251 bits (640), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/145 (86%), Positives = 126/145 (86%)

Query: 1   MDLETENHXXXXXXXXXXXXXXXXXXXGVHAYLRKPNVRHRLNSRFLTATVRGVQQANRV 60
           MDLETENH                   GVHAYLRKPNVRHRLNSRFLTATVRGVQQANRV
Sbjct: 1   MDLETENHLASLLLEEARRLQLEADREGVHAYLRKPNVRHRLNSRFLTATVRGVQQANRV 60

Query: 61  VEVNKMWRAREKELELESKTKRRSINRGDSRGKKRRSDVRNQSSSPRMEQDSTSYNSSYL 120
           VEVNKMWRAREKELELESKTKRRSINRGDSRGKKRRSDVRNQSSSPRMEQDSTSYNSSYL
Sbjct: 61  VEVNKMWRAREKELELESKTKRRSINRGDSRGKKRRSDVRNQSSSPRMEQDSTSYNSSYL 120

Query: 121 DLEGALGDDEIEMFLHSRLVASIFS 145
           DLEGALGDDEIEMFLHSRLVASIFS
Sbjct: 121 DLEGALGDDEIEMFLHSRLVASIFS 145



>Os07g0213400 Conserved hypothetical protein
          Length = 266

 Score =  184 bits (467), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/139 (68%), Positives = 106/139 (76%), Gaps = 1/139 (0%)

Query: 1   MDLETENHXXXXXXXXXXXXXXXXXXXGVHAYLRKPNVRHRLNSRFLTATVRGVQQANRV 60
           MDLETEN                    GVHAYLRKPNVRHR NSRFLTATVRGVQQANRV
Sbjct: 11  MDLETENRLASLLLEEARRLQAEADREGVHAYLRKPNVRHRPNSRFLTATVRGVQQANRV 70

Query: 61  VEVNKMWRAREKELELESKTKRRSINRGDSRGKKRRSDVRNQSSSPRMEQDSTSYNSSYL 120
           VEVN+MWRAREKELELESK K RS   GD+RG+KR+SD+RNQSSSPR+E++  +YNSSY 
Sbjct: 71  VEVNEMWRAREKELELESKMK-RSRGLGDARGEKRKSDLRNQSSSPRVEEEGIAYNSSYS 129

Query: 121 DLEGALGDDEIEMFLHSRL 139
           D E  LGDD+IE FLHSR+
Sbjct: 130 DQEDGLGDDDIEKFLHSRV 148



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.128    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,839,742
Number of extensions: 137438
Number of successful extensions: 729
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 727
Number of HSP's successfully gapped: 2
Length of query: 145
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 54
Effective length of database: 12,284,327
Effective search space: 663353658
Effective search space used: 663353658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 151 (62.8 bits)