Os07g0213400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0213400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.75 | 0.265 | 9.3 | -0.73 | 0.494 | 0.716 | -0.481 | 0.75 | -0.145 | 5.58 | 25.7 | 56 | -- | -- |
| 32.64 | 0.266 | 9.29 | -0.616 | 0.499 | 0.671 | -0.325 | -- | -0.117 | 5.59 | 25.8 | 58 | -- | -- |
| 32.29 | 0.265 | 9.3 | -0.713 | 0.49 | 0.712 | -- | 0.61 | -0.142 | 5.61 | 25.7 | 59 | -- | -- |
| 32.89 | 0.267 | 9.29 | -0.619 | 0.495 | 0.663 | -- | -- | -0.12 | 5.55 | 25.8 | 59 | -- | -- |
| 42.07 | 0.302 | 9.3 | -0.638 | -- | 0.932 | -- | 0.621 | -0.0828 | -- | 27.87 | 136 | -- | -- |
| 39.14 | 0.293 | 9.32 | -0.777 | 0.602 | -- | -0.232 | -- | -0.261 | 4.85 | -- | -- | -- | -- |
| 39.28 | 0.293 | 9.32 | -0.776 | 0.6 | -- | -- | -- | -0.26 | 4.81 | -- | -- | -- | -- |
| 42.6 | 0.304 | 9.28 | -0.536 | -- | 0.913 | -- | -- | -0.0607 | -- | 28.3 | 138 | -- | -- |
| 41.93 | 0.302 | 9.26 | -- | 0.45 | 0.909 | -- | -- | -0.00429 | 5.89 | 25.8 | 80 | -- | -- |
| 58.31 | 0.357 | 9.33 | -0.754 | -- | -- | -- | -- | -0.245 | -- | -- | -- | -- | -- |
| 55.15 | 0.347 | 9.3 | -- | 0.586 | -- | -- | -- | -0.174 | 4.85 | -- | -- | -- | -- |
| 49.5 | 0.328 | 9.26 | -- | -- | 1.08 | -- | -- | 0.0327 | -- | 27.97 | 142 | -- | -- |
| 73.29 | 0.4 | 9.31 | -- | -- | -- | -- | -- | -0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.01 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 3 | 29.20 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 20 | 6 |
| 6 | 29.41 | temperature | 25.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 15 | 29.83 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 25 | 30.13 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 45 | 30.49 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 49 | 30.57 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 51 | 30.67 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 56 | 30.71 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 60 | 30.75 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 63 | 30.76 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 71 | 30.80 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 18 |
| 97 | 30.97 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 126 | 31.09 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 177 | 31.36 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 186 | 31.42 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 9 |
| 196 | 31.46 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 20 |
| 210 | 31.55 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 18 |
| 257 | 31.71 | temperature | 20.0 | 90 | > th | dose independent | rect. | 23 | 16 |
| 260 | 31.71 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 277 | 31.78 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 16 |
| 299 | 31.84 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 318 | 31.90 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 324 | 31.91 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 367 | 32.02 | temperature | 25.0 | 30 | < th | dose dependent | no | NA | NA |
| 376 | 32.03 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 377 | 32.03 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 383 | 32.04 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 384 | 32.04 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 385 | 32.04 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 389 | 32.06 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 392 | 32.06 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 394 | 32.06 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 427 | 32.12 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 452 | 32.15 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 513 | 32.28 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 516 | 32.28 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 523 | 32.29 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 602 | 32.37 | wind | 5.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 663 | 32.46 | radiation | 20.0 | 10 | < th | dose independent | rect. | 3 | 21 |
| 718 | 32.55 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 727 | 32.57 | radiation | 20.0 | 10 | < th | dose independent | rect. | 1 | 23 |
| 728 | 32.57 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 7 |
| 776 | 32.64 | wind | 5.0 | 90 | < th | dose independent | rect. | 9 | 7 |
| 824 | 32.71 | radiation | 20.0 | 10 | < th | dose independent | rect. | 5 | 15 |
| 829 | 32.71 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 836 | 32.73 | temperature | 25.0 | 270 | > th | dose independent | sin | 11 | NA |
| 870 | 32.77 | radiation | 20.0 | 10 | < th | dose independent | rect. | 5 | 17 |
| 923 | 32.83 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 940 | 32.86 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 948 | 32.88 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 962 | 32.89 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 969 | 32.91 | temperature | 25.0 | 270 | < th | dose independent | sin | 10 | NA |
| 971 | 32.91 | radiation | 10.0 | 10 | > th | dose independent | rect. | 9 | 9 |
| 992 | 32.91 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 3 | 21 |