BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0213400 Os07g0213400|AK062273
         (266 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33690.1  | chr4:16175198-16176137 FORWARD LENGTH=247          114   4e-26

>AT4G33690.1 | chr4:16175198-16176137 FORWARD LENGTH=247
          Length = 246

 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 86/170 (50%), Gaps = 14/170 (8%)

Query: 11  MDLETENXXXXXXXXXXXXXXXXXXXXGVHAYLRKPNVRHRPNSRFLTATVRGVQQANRV 70
           MDLETEN                    GV AYL KPNVRHRPNSRFLTATV GVQQAN+ 
Sbjct: 1   MDLETENRIASILLREAAELRRQAEKDGVRAYLEKPNVRHRPNSRFLTATVLGVQQANKA 60

Query: 71  VEVNEMWRAREKELELESKMKRSRGLGDARGEKRKSDLRNQSSSPRVEEEGIAYNSSYSD 130
           VE NEMW  R KE+E   ++KR      + G+  +++ R+        +E +   S    
Sbjct: 61  VETNEMWSLRSKEIEFGERLKRKSRDESSNGQSEQNNRRDFLKRCTSVDENVTTTSLSPS 120

Query: 131 QEDGLGDD--------------DIEKFLHSRVKRGRGAVGSRMDEPGPYL 166
                                 +++ FL SRVKRGRG+VG+ MDEP P L
Sbjct: 121 SSRSRSKRWQSEDDDDEGLGDVEVKTFLQSRVKRGRGSVGAMMDEPLPCL 170



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.308    0.127    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,803,374
Number of extensions: 203040
Number of successful extensions: 663
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 662
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 169
Effective length of database: 8,447,217
Effective search space: 1427579673
Effective search space used: 1427579673
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 111 (47.4 bits)