BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0213400 Os07g0213400|AK062273
         (266 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0213400  Conserved hypothetical protein                      404   e-113
Os08g0192200  Hypothetical protein                                185   3e-47

>Os07g0213400 Conserved hypothetical protein
          Length = 266

 Score =  404 bits (1037), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/223 (91%), Positives = 203/223 (91%)

Query: 1   MSQVGSAPETMDLETENXXXXXXXXXXXXXXXXXXXXGVHAYLRKPNVRHRPNSRFLTAT 60
           MSQVGSAPETMDLETEN                    GVHAYLRKPNVRHRPNSRFLTAT
Sbjct: 1   MSQVGSAPETMDLETENRLASLLLEEARRLQAEADREGVHAYLRKPNVRHRPNSRFLTAT 60

Query: 61  VRGVQQANRVVEVNEMWRAREKELELESKMKRSRGLGDARGEKRKSDLRNQSSSPRVEEE 120
           VRGVQQANRVVEVNEMWRAREKELELESKMKRSRGLGDARGEKRKSDLRNQSSSPRVEEE
Sbjct: 61  VRGVQQANRVVEVNEMWRAREKELELESKMKRSRGLGDARGEKRKSDLRNQSSSPRVEEE 120

Query: 121 GIAYNSSYSDQEDGLGDDDIEKFLHSRVKRGRGAVGSRMDEPGPYLNVASRSQENEPNAD 180
           GIAYNSSYSDQEDGLGDDDIEKFLHSRVKRGRGAVGSRMDEPGPYLNVASRSQENEPNAD
Sbjct: 121 GIAYNSSYSDQEDGLGDDDIEKFLHSRVKRGRGAVGSRMDEPGPYLNVASRSQENEPNAD 180

Query: 181 TQVEEKWERRVQGPEKPVSLRSRSPDDYWRREALDGEPSSPEL 223
           TQVEEKWERRVQGPEKPVSLRSRSPDDYWRREALDGEPSSPEL
Sbjct: 181 TQVEEKWERRVQGPEKPVSLRSRSPDDYWRREALDGEPSSPEL 223



>Os08g0192200 Hypothetical protein
          Length = 145

 Score =  185 bits (469), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 95/139 (68%), Positives = 106/139 (76%), Gaps = 1/139 (0%)

Query: 11  MDLETENXXXXXXXXXXXXXXXXXXXXGVHAYLRKPNVRHRPNSRFLTATVRGVQQANRV 70
           MDLETEN                    GVHAYLRKPNVRHR NSRFLTATVRGVQQANRV
Sbjct: 1   MDLETENHLASLLLEEARRLQLEADREGVHAYLRKPNVRHRLNSRFLTATVRGVQQANRV 60

Query: 71  VEVNEMWRAREKELELESKMK-RSRGLGDARGEKRKSDLRNQSSSPRVEEEGIAYNSSYS 129
           VEVN+MWRAREKELELESK K RS   GD+RG+KR+SD+RNQSSSPR+E++  +YNSSY 
Sbjct: 61  VEVNKMWRAREKELELESKTKRRSINRGDSRGKKRRSDVRNQSSSPRMEQDSTSYNSSYL 120

Query: 130 DQEDGLGDDDIEKFLHSRV 148
           D E  LGDD+IE FLHSR+
Sbjct: 121 DLEGALGDDEIEMFLHSRL 139



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.127    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,724,587
Number of extensions: 329570
Number of successful extensions: 1067
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1065
Number of HSP's successfully gapped: 2
Length of query: 266
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 167
Effective length of database: 11,866,615
Effective search space: 1981724705
Effective search space used: 1981724705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 155 (64.3 bits)