Os08g0192200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os08g0192200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.01 | 0.297 | 10.9 | -0.163 | 0.672 | 0.502 | 0.371 | -0.482 | -0.0755 | 8.32 | 0.6959 | 38 | -- | -- |
| 40.69 | 0.297 | 10.9 | -0.134 | 0.696 | 0.543 | 0.0611 | -- | -0.0789 | 7.89 | 0.54 | 60 | -- | -- |
| 40.23 | 0.295 | 10.9 | -0.149 | 0.678 | 0.502 | -- | -0.301 | -0.0783 | 8.29 | 0.76 | 38 | -- | -- |
| 40.67 | 0.297 | 10.9 | -0.144 | 0.689 | 0.541 | -- | -- | -0.0824 | 7.94 | 0.5395 | 60 | -- | -- |
| 54.96 | 0.347 | 10.9 | -0.162 | -- | 0.77 | -- | -0.363 | -0.0676 | -- | 0.76 | 38 | -- | -- |
| 45.87 | 0.318 | 10.8 | -0.107 | 1.12 | -- | -0.2 | -- | -0.0577 | 9.97 | -- | -- | -- | -- |
| 46.03 | 0.318 | 10.8 | -0.115 | 1.13 | -- | -- | -- | -0.0582 | 9.97 | -- | -- | -- | -- |
| 55.57 | 0.349 | 10.9 | -0.151 | -- | 0.769 | -- | -- | -0.0661 | -- | 0.77 | 20 | -- | -- |
| 41.22 | 0.299 | 10.8 | -- | 0.685 | 0.544 | -- | -- | -0.0688 | 7.94 | 0.5399 | 60 | -- | -- |
| 122.14 | 0.516 | 10.9 | -0.128 | -- | -- | -- | -- | -0.0587 | -- | -- | -- | -- | -- |
| 46.37 | 0.319 | 10.8 | -- | 1.13 | -- | -- | -- | -0.0454 | 9.97 | -- | -- | -- | -- |
| 56.17 | 0.35 | 10.9 | -- | -- | 0.767 | -- | -- | -0.0493 | -- | 0.7791 | 16 | -- | -- |
| 122.57 | 0.517 | 10.9 | -- | -- | -- | -- | -- | -0.0445 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.25 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 23 |
| 2 | 38.35 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 3 | 39.31 | radiation | 1 | 30 | < th | dose independent | sin | 11 | NA |
| 4 | 39.39 | radiation | 1 | 30 | > th | dose independent | sin | 11 | NA |
| 5 | 39.42 | wind | 9 | 90 | < th | dose dependent | rect. | 4 | 14 |
| 6 | 39.53 | radiation | 1 | 30 | > th | dose independent | rect. | 15 | 23 |
| 13 | 39.67 | radiation | 1 | 90 | < th | dose dependent | sin | 12 | NA |
| 21 | 39.85 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 23 | 39.92 | radiation | 1 | 30 | < th | dose independent | rect. | 19 | 23 |
| 25 | 39.93 | radiation | 1 | 30 | > th | dose independent | rect. | 16 | 16 |
| 26 | 39.93 | radiation | 1 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 36 | 40.03 | radiation | 1 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 37 | 40.05 | radiation | 1 | 30 | < th | dose independent | rect. | 1 | 23 |
| 38 | 40.06 | radiation | 1 | 90 | < th | dose dependent | rect. | 10 | 18 |
| 41 | 40.07 | radiation | 1 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 43 | 40.10 | radiation | 1 | 90 | < th | dose dependent | rect. | 13 | 15 |
| 44 | 40.11 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 46 | 40.11 | radiation | 1 | 90 | < th | dose independent | rect. | 9 | 19 |
| 54 | 40.16 | radiation | 1 | 90 | < th | dose independent | rect. | 13 | 15 |
| 66 | 40.25 | temperature | 25 | 10 | > th | dose independent | rect. | 15 | 17 |
| 68 | 40.27 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 90 | 40.41 | wind | 3 | 90 | < th | dose dependent | rect. | 4 | 9 |
| 103 | 40.47 | humidity | 50 | 30 | > th | dose dependent | rect. | 10 | 18 |
| 116 | 40.54 | radiation | 1 | 30 | < th | dose dependent | no | NA | NA |
| 117 | 40.54 | radiation | 1 | 30 | < th | dose dependent | rect. | 11 | 21 |
| 123 | 40.54 | radiation | 1 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 124 | 40.54 | radiation | 1 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 127 | 40.55 | wind | 1 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 131 | 40.56 | radiation | 1 | 30 | > th | dose independent | no | NA | NA |
| 132 | 40.56 | radiation | 1 | 30 | < th | dose independent | no | NA | NA |
| 133 | 40.56 | radiation | 1 | 30 | > th | dose independent | rect. | 5 | 14 |
| 169 | 40.56 | radiation | 1 | 30 | < th | dose independent | rect. | 11 | 21 |
| 194 | 40.56 | radiation | 1 | 30 | < th | dose independent | rect. | 13 | 23 |
| 195 | 40.56 | radiation | 1 | 30 | < th | dose independent | rect. | 15 | 23 |
| 198 | 40.56 | radiation | 1 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 201 | 40.58 | radiation | 1 | 30 | < th | dose independent | rect. | 17 | 23 |
| 206 | 40.59 | radiation | 1 | 30 | < th | dose dependent | rect. | 13 | 19 |
| 218 | 40.60 | radiation | 1 | 30 | < th | dose independent | rect. | 13 | 19 |
| 234 | 40.62 | wind | 5 | 270 | < th | dose independent | rect. | 14 | 17 |
| 250 | 40.64 | wind | 1 | 90 | > th | dose independent | rect. | 1 | 14 |
| 259 | 40.66 | wind | 3 | 270 | < th | dose independent | rect. | 2 | 8 |
| 275 | 40.68 | wind | 3 | 90 | < th | dose dependent | rect. | 4 | 21 |
| 287 | 40.71 | wind | 3 | 90 | < th | dose independent | rect. | 4 | 9 |
| 289 | 40.71 | radiation | 1 | 30 | < th | dose independent | rect. | 15 | 21 |
| 318 | 40.75 | radiation | 1 | 30 | < th | dose independent | rect. | 15 | 17 |
| 328 | 40.76 | humidity | 60 | 90 | > th | dose dependent | rect. | 19 | 9 |
| 331 | 40.77 | wind | 3 | 90 | < th | dose independent | rect. | 4 | 14 |
| 332 | 40.77 | humidity | 90 | 10 | < th | dose independent | rect. | 15 | 17 |
| 333 | 40.77 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 334 | 40.77 | wind | 3 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 364 | 40.82 | wind | 3 | 90 | < th | dose independent | rect. | 4 | 6 |
| 368 | 40.83 | wind | 7 | 90 | < th | dose independent | rect. | 4 | 15 |
| 388 | 40.85 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 2 |
| 429 | 40.89 | wind | 3 | 90 | < th | dose independent | rect. | 4 | 11 |
| 432 | 40.89 | wind | 1 | 90 | > th | dose dependent | rect. | 22 | 17 |
| 450 | 40.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 471 | 40.97 | wind | 3 | 90 | > th | dose independent | rect. | 23 | 16 |
| 495 | 41.00 | wind | 5 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 543 | 41.05 | wind | 9 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 623 | 41.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 646 | 41.12 | radiation | 30 | 90 | < th | dose independent | rect. | 4 | 7 |
| 653 | 41.12 | radiation | 1 | 30 | < th | dose independent | rect. | 19 | 19 |
| 667 | 41.13 | radiation | 1 | 90 | > th | dose independent | rect. | 11 | 23 |
| 682 | 41.14 | wind | 5 | 270 | < th | dose dependent | rect. | 2 | 8 |
| 685 | 41.15 | wind | 3 | 270 | < th | dose independent | rect. | 4 | 2 |
| 713 | 41.18 | radiation | 1 | 30 | < th | dose independent | rect. | 19 | 17 |
| 720 | 41.18 | wind | 9 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 721 | 41.18 | humidity | 80 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 725 | 41.19 | humidity | 60 | 10 | > th | dose dependent | rect. | 19 | 10 |
| 739 | 41.21 | radiation | 1 | 30 | < th | dose independent | rect. | 19 | 13 |
| 747 | 41.21 | wind | 5 | 10 | < th | dose dependent | rect. | 5 | 5 |
| 748 | 41.21 | temperature | 10 | 90 | > th | dose dependent | rect. | 15 | 10 |
| 774 | 41.24 | wind | 1 | 270 | > th | dose independent | rect. | 7 | 20 |
| 788 | 41.25 | wind | 1 | 90 | > th | dose dependent | rect. | 9 | 6 |
| 793 | 41.26 | humidity | 50 | 90 | > th | dose independent | rect. | 9 | 19 |
| 810 | 41.28 | temperature | 25 | 10 | > th | dose independent | rect. | 12 | 22 |
| 825 | 41.29 | wind | 1 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 838 | 41.31 | wind | 1 | 270 | > th | dose independent | rect. | 7 | 7 |
| 914 | 41.32 | humidity | 50 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 956 | 41.37 | wind | 5 | 10 | < th | dose independent | rect. | 5 | 14 |
| 974 | 41.38 | humidity | 50 | 90 | > th | dose dependent | rect. | 13 | 15 |
| 975 | 41.38 | radiation | 1 | 30 | < th | dose dependent | rect. | 19 | 19 |