BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0163600 Os08g0163600|Os08g0163600
         (311 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0163600  Harpin-induced 1 domain containing protein          471   e-133
Os06g0710400  Harpin-induced 1 domain containing protein          129   3e-30

>Os08g0163600 Harpin-induced 1 domain containing protein
          Length = 311

 Score =  471 bits (1211), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/300 (81%), Positives = 243/300 (81%)

Query: 1   MAAMVVHGVQSGDXXXXXXXXXXXXAQARHATPRRGQGRXXXXXXXXXXXXXXXXXXXSL 60
           MAAMVVHGVQSGD            AQARHATPRRGQGR                   SL
Sbjct: 1   MAAMVVHGVQSGDSKPSSPPTSPPPAQARHATPRRGQGRAHKAAAAAAAAAAAAAAKASL 60

Query: 61  HLTMLSAANGGGVHHDHRGDYPPDQRYGNGGEEARQQQPSWQPPRDQVTHHPRGRRAHRS 120
           HLTMLSAANGGGVHHDHRGDYPPDQRYGNGGEEARQQQPSWQPPRDQVTHHPRGRRAHRS
Sbjct: 61  HLTMLSAANGGGVHHDHRGDYPPDQRYGNGGEEARQQQPSWQPPRDQVTHHPRGRRAHRS 120

Query: 121 GPLEWTXXXXXXXXXXXXXXXXXXXXXXXXXXQPRAPYLAIRSARLDDLVYDQQGALEAA 180
           GPLEWT                          QPRAPYLAIRSARLDDLVYDQQGALEAA
Sbjct: 121 GPLEWTAAVVFTVLAVVVLVAAVAVLVVVLLLQPRAPYLAIRSARLDDLVYDQQGALEAA 180

Query: 181 LSLGVAAENGNARSGATFSDFELRLVFHRVVIAILRADPFDVPPKGSLPLGYVVRSSGIP 240
           LSLGVAAENGNARSGATFSDFELRLVFHRVVIAILRADPFDVPPKGSLPLGYVVRSSGIP
Sbjct: 181 LSLGVAAENGNARSGATFSDFELRLVFHRVVIAILRADPFDVPPKGSLPLGYVVRSSGIP 240

Query: 241 LDSSGMAAMEAALADGVVPFTVSGQASTRWKVGGLVPFKYWTRLRCDLRFFWPNGTAVDL 300
           LDSSGMAAMEAALADGVVPFTVSGQASTRWKVGGLVPFKYWTRLRCDLRFFWPNGTAVDL
Sbjct: 241 LDSSGMAAMEAALADGVVPFTVSGQASTRWKVGGLVPFKYWTRLRCDLRFFWPNGTAVDL 300



>Os06g0710400 Harpin-induced 1 domain containing protein
          Length = 250

 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 103/213 (48%), Gaps = 7/213 (3%)

Query: 93  EARQQQPSWQPPRDQVTHHPRG-----RRAHRSGPLEWTXXXXXXXXXXXXXXXXXXXXX 147
           E R          D   HH RG        HRS  + W                      
Sbjct: 26  EERHHGTQTAMASDDDRHHDRGGWIRPEEKHRSSGVAWALVILCTLLAVGVIVAGATVFA 85

Query: 148 XXXXXQPRAPYLAIRSARLDDLVYDQQGALEAALSL-GVAAENGNARSGATFSDFELRLV 206
                +PR PYL +  A+L  L YDQ G ++   +L  V A N N+R+ A+F+  +L L 
Sbjct: 86  VYLIYKPRMPYLVVSDAQLVRLDYDQGGTIDYLEALVTVMARNTNSRADASFARVDLALR 145

Query: 207 FHRVVIAILRADPFDVPPKGSLPLGYVVRSSGIPLDSSGMAAMEAALADGVVPFTVSGQA 266
           FH   +A LRA PF V    + PL Y V S G  LD+ GM AM+A+L  GVVP  + G+A
Sbjct: 146 FHGADVARLRAAPFVVASASAAPLRYDVVSKGRALDAGGMRAMDASLKSGVVPLDLLGRA 205

Query: 267 STRWKVGGLVPFKYWTRLRCDLRFFWP-NGTAV 298
            TRWKVG     K+WTR+ C L FF+P NGT +
Sbjct: 206 RTRWKVGIFASLKFWTRISCRLHFFYPGNGTVM 238



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,891,068
Number of extensions: 406849
Number of successful extensions: 1160
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1157
Number of HSP's successfully gapped: 2
Length of query: 311
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 210
Effective length of database: 11,762,187
Effective search space: 2470059270
Effective search space used: 2470059270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)