Os06g0710400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os06g0710400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.43 | 0.48 | 8.64 | -0.669 | 0.844 | 0.815 | 0.273 | -0.0866 | -0.383 | 18.9 | 49.76 | 4268 | -- | -- |
| 104.44 | 0.476 | 8.63 | -0.669 | 0.844 | 0.792 | 0.276 | -- | -0.385 | 19 | 50 | 4268 | -- | -- |
| 104.62 | 0.476 | 8.63 | -0.673 | 0.844 | 0.809 | -- | -0.0692 | -0.382 | 19 | 49.73 | 4268 | -- | -- |
| 104.62 | 0.476 | 8.63 | -0.667 | 0.845 | 0.786 | -- | -- | -0.384 | 19 | 49.86 | 4268 | -- | -- |
| 142.1 | 0.555 | 8.63 | -0.68 | -- | 0.838 | -- | -0.158 | -0.407 | -- | 49 | 4203 | -- | -- |
| 116.11 | 0.505 | 8.65 | -0.341 | 0.845 | -- | 0.268 | -- | -0.464 | 19.2 | -- | -- | -- | -- |
| 116.3 | 0.505 | 8.65 | -0.346 | 0.846 | -- | -- | -- | -0.463 | 19.2 | -- | -- | -- | -- |
| 140.89 | 0.553 | 8.61 | -0.648 | -- | 1.17 | -- | -- | -0.41 | -- | 49 | 4923 | -- | -- |
| 107.47 | 0.483 | 8.62 | -- | 0.826 | 0.749 | -- | -- | -0.384 | 19 | 53.69 | 16037 | -- | -- |
| 154.1 | 0.58 | 8.63 | -0.362 | -- | -- | -- | -- | -0.478 | -- | -- | -- | -- | -- |
| 119.46 | 0.511 | 8.64 | -- | 0.849 | -- | -- | -- | -0.425 | 19.2 | -- | -- | -- | -- |
| 141.1 | 0.553 | 8.61 | -- | -- | 1.02 | -- | -- | -0.429 | -- | 67.98 | 6480 | -- | -- |
| 157.55 | 0.586 | 8.62 | -- | -- | -- | -- | -- | -0.438 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.62 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 21 | 19 |
| 16 | 98.56 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 19 | 98.67 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 20 | 98.74 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 22 | 98.83 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 23 | 99.04 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 26 | 99.21 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 28 | 99.25 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 30 | 99.37 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 15 |
| 42 | 99.59 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 55 | 99.83 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 59 | 99.97 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 69 | 100.11 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 85 | 100.27 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 117 | 100.78 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 128 | 100.95 | temperature | 25.0 | 90 | > th | dose independent | rect. | 21 | 19 |
| 138 | 101.09 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 147 | 101.19 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 150 | 101.22 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 10 |
| 173 | 101.46 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 175 | 101.49 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 198 | 101.73 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 205 | 101.78 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 1 | 11 |
| 209 | 101.81 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 19 |
| 218 | 101.85 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 17 |
| 220 | 101.86 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 9 |
| 254 | 102.04 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 255 | 102.04 | temperature | 15.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 256 | 102.04 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 260 | 102.05 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 269 | 102.10 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 283 | 102.17 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 286 | 102.18 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 10 |
| 293 | 102.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 315 | 102.32 | temperature | 15.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 319 | 102.33 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 331 | 102.38 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 333 | 102.39 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 340 | 102.39 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 341 | 102.39 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 8 |
| 349 | 102.42 | temperature | 30.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 367 | 102.47 | temperature | 15.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 372 | 102.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 422 | 102.63 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 453 | 102.73 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 10 |
| 464 | 102.76 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 465 | 102.76 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 15 |
| 472 | 102.78 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 526 | 102.93 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 13 |
| 535 | 102.94 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 16 | 5 |
| 574 | 103.03 | wind | 3.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 584 | 103.05 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 16 | 9 |
| 602 | 103.08 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 16 | 7 |
| 643 | 103.16 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 646 | 103.16 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 16 | 14 |
| 655 | 103.18 | temperature | 25.0 | 90 | < th | dose independent | sin | 5 | NA |
| 660 | 103.18 | humidity | 50.0 | 4320 | < th | dose dependent | sin | 11 | NA |
| 663 | 103.18 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 665 | 103.19 | wind | 3.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 711 | 103.26 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 759 | 103.35 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 762 | 103.35 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 781 | 103.39 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 785 | 103.39 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 794 | 103.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 799 | 103.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 827 | 103.47 | humidity | 50.0 | 4320 | < th | dose independent | sin | 15 | NA |
| 856 | 103.53 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 865 | 103.54 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 14 | 21 |
| 888 | 103.57 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 989 | 103.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 997 | 103.71 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |