BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0710400 Os06g0710400|AK062418
(250 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0710400 Harpin-induced 1 domain containing protein 442 e-124
Os08g0163600 Harpin-induced 1 domain containing protein 115 3e-26
>Os06g0710400 Harpin-induced 1 domain containing protein
Length = 250
Score = 442 bits (1136), Expect = e-124, Method: Compositional matrix adjust.
Identities = 218/231 (94%), Positives = 218/231 (94%)
Query: 20 ELSMAAEERHHGTQTAMASDDDRHHDRGGWIRPEEKHRSSGVAWALVILCTLLAVGVIVA 79
ELSMAAEERHHGTQTAMASDDDRHHDRGGWIRPEEKHRSSGVAWALVILCTLLAVGVIVA
Sbjct: 20 ELSMAAEERHHGTQTAMASDDDRHHDRGGWIRPEEKHRSSGVAWALVILCTLLAVGVIVA 79
Query: 80 GATVFAVYLIYKPRMPYLVVSDAQLVRLDYDQGGTIDYLEALVTVMARNTNSRADASFAR 139
GATVFAVYLIYKPRMPYLVVSDAQLVRLDYDQGGTIDYLEALVTVMARNTNSRADASFAR
Sbjct: 80 GATVFAVYLIYKPRMPYLVVSDAQLVRLDYDQGGTIDYLEALVTVMARNTNSRADASFAR 139
Query: 140 VDLALRFHGADVARLRXXXXXXXXXXXXXLRYDVVSKGRALDAGGMRAMDASLKSGVVPL 199
VDLALRFHGADVARLR LRYDVVSKGRALDAGGMRAMDASLKSGVVPL
Sbjct: 140 VDLALRFHGADVARLRAAPFVVASASAAPLRYDVVSKGRALDAGGMRAMDASLKSGVVPL 199
Query: 200 DLLGRARTRWKVGIFASLKFWTRISCRLHFFYPGNGTVMASDRNTCTSRSP 250
DLLGRARTRWKVGIFASLKFWTRISCRLHFFYPGNGTVMASDRNTCTSRSP
Sbjct: 200 DLLGRARTRWKVGIFASLKFWTRISCRLHFFYPGNGTVMASDRNTCTSRSP 250
>Os08g0163600 Harpin-induced 1 domain containing protein
Length = 311
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 112/213 (52%), Gaps = 7/213 (3%)
Query: 26 EERHHGTQTAMASDDDRHHDRGGWIRPEEKHRSSGVAWALVILCTLLAVGVIVAGATVFA 85
E R D HH RG HRS + W ++ T+LAV V+VA V
Sbjct: 93 EARQQQPSWQPPRDQVTHHPRG-----RRAHRSGPLEWTAAVVFTVLAVVVLVAAVAVLV 147
Query: 86 VYLIYKPRMPYLVVSDAQLVRLDYDQGGTIDYLEALVTVMARNTNSRADASFARVDLALR 145
V L+ +PR PYL + A+L L YDQ G ++ +L V A N N+R+ A+F+ +L L
Sbjct: 148 VVLLLQPRAPYLAIRSARLDDLVYDQQGALEAALSL-GVAAENGNARSGATFSDFELRLV 206
Query: 146 FHGADVARLRXXXXXXXXXXXXXLRYDVVSKGRALDAGGMRAMDASLKSGVVPLDLLGRA 205
FH +A LR L Y V S G LD+ GM AM+A+L GVVP + G+A
Sbjct: 207 FHRVVIAILRADPFDVPPKGSLPLGYVVRSSGIPLDSSGMAAMEAALADGVVPFTVSGQA 266
Query: 206 RTRWKVGIFASLKFWTRISCRLHFFYPGNGTVM 238
TRWKVG K+WTR+ C L FF+P NGT +
Sbjct: 267 STRWKVGGLVPFKYWTRLRCDLRFFWP-NGTAV 298
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,537,980
Number of extensions: 277331
Number of successful extensions: 919
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 918
Number of HSP's successfully gapped: 2
Length of query: 250
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 152
Effective length of database: 11,918,829
Effective search space: 1811662008
Effective search space used: 1811662008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)