Os08g0163600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os08g0163600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.24 | 0.604 | 5.08 | 1.33 | 0.444 | 1.76 | -0.362 | -0.295 | -0.177 | 14.5 | 24.4 | 614 | -- | -- |
| 165.36 | 0.599 | 5.08 | 1.28 | 0.443 | 1.79 | -0.376 | -- | -0.188 | 14.5 | 24.35 | 613 | -- | -- |
| 165.7 | 0.6 | 5.08 | 1.33 | 0.441 | 1.75 | -- | -0.343 | -0.178 | 14.5 | 24.4 | 617 | -- | -- |
| 165.86 | 0.6 | 5.08 | 1.27 | 0.442 | 1.79 | -- | -- | -0.191 | 14.5 | 24.33 | 613 | -- | -- |
| 174.39 | 0.615 | 5.07 | 1.36 | -- | 1.8 | -- | -0.463 | -0.157 | -- | 24.7 | 793 | -- | -- |
| 211.83 | 0.682 | 5.15 | 0.799 | 0.526 | -- | -0.359 | -- | -0.536 | 13 | -- | -- | -- | -- |
| 212.37 | 0.682 | 5.15 | 0.786 | 0.526 | -- | -- | -- | -0.538 | 12.9 | -- | -- | -- | -- |
| 174.62 | 0.615 | 5.08 | 1.3 | -- | 1.88 | -- | -- | -0.171 | -- | 24.5 | 782 | -- | -- |
| 203.51 | 0.664 | 5.13 | -- | 0.457 | 1.34 | -- | -- | -0.406 | 13.7 | 24.3 | 554 | -- | -- |
| 229.62 | 0.708 | 5.16 | 0.766 | -- | -- | -- | -- | -0.548 | -- | -- | -- | -- | -- |
| 228.63 | 0.707 | 5.17 | -- | 0.514 | -- | -- | -- | -0.626 | 12.9 | -- | -- | -- | -- |
| 213.7 | 0.681 | 5.13 | -- | -- | 1.33 | -- | -- | -0.407 | -- | 24.57 | 747 | -- | -- |
| 245.1 | 0.731 | 5.18 | -- | -- | -- | -- | -- | -0.633 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 4 | 158.19 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 13 | 159.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 16 | 159.29 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 17 | 159.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 18 | 159.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 21 | 159.50 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 11 |
| 61 | 160.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 180 | 162.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 232 | 163.66 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 267 | 164.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 393 | 166.18 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 406 | 166.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 489 | 167.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 593 | 169.02 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 598 | 169.05 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 4 |
| 642 | 169.67 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 668 | 170.00 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 680 | 170.23 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 686 | 170.32 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 714 | 170.68 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 758 | 171.15 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 18 |
| 805 | 171.64 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 16 |
| 841 | 171.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 842 | 171.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 846 | 171.99 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 14 |
| 886 | 172.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 891 | 172.36 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 908 | 172.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 933 | 172.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 955 | 172.97 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 11 |
| 969 | 173.07 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 13 |
| 981 | 173.15 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 7 |
| 984 | 173.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |