BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0163600 Os08g0163600|Os08g0163600
(311 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G45320.1 | chr5:18362354-18363053 REVERSE LENGTH=199 103 1e-22
AT1G13050.1 | chr1:4450568-4451521 FORWARD LENGTH=318 64 1e-10
AT3G26350.1 | chr3:9653660-9654730 REVERSE LENGTH=357 58 7e-09
>AT5G45320.1 | chr5:18362354-18363053 REVERSE LENGTH=199
Length = 198
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%)
Query: 112 PRGRRAHRSGPLEWTXXXXXXXXXXXXXXXXXXXXXXXXXXQPRAPYLAIRSARLDDLVY 171
PR H + P W PR P +++ A LD L Y
Sbjct: 2 PRLTSRHGTSPFIWCAAIICAIISIVVIVGGIIVFVGYLVIHPRVPIISVADAHLDFLKY 61
Query: 172 DQQGALEAALSLGVAAENGNARSGATFSDFELRLVFHRVVIAILRADPFDVPPKGSLPLG 231
D G L+ L++ + EN NA++ A F + E +L + IAIL+A F+V + S+ L
Sbjct: 62 DIVGVLQTQLTIVIRVENDNAKAHALFDETEFKLSYEGKPIAILKAPEFEVVKEKSMFLP 121
Query: 232 YVVRSSGIPLDSSGMAAMEAALADGVVPFTVSGQASTRWKVGGLVPFKYWTRLRCDLRF 290
Y+V+S IPL+ + M A++ A+ V+ F + G + TRW+VG L K+ L C LRF
Sbjct: 122 YLVQSYPIPLNPTMMQAVDYAVKKDVITFELKGGSRTRWRVGPLGSVKFECNLSCQLRF 180
>AT1G13050.1 | chr1:4450568-4451521 FORWARD LENGTH=318
Length = 317
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%)
Query: 153 QPRAPYLAIRSARLDDLVYDQQGALEAALSLGVAAENGNARSGATFSDFELRLVFHRVVI 212
+PR+PY I +A L+ D L L++ V N + +S FS L F+ +I
Sbjct: 163 RPRSPYFDISAATLNTANLDMGYVLNGDLAVVVNFTNPSKKSSVDFSYVMFELYFYNTLI 222
Query: 213 AILRADPFDVPPKGSLPLGYVVRSSGIPLDSSGMAAMEAALADGVVPFTVSGQASTRWKV 272
A +PF VP S+ + + SS + + ++ L G V + G R +
Sbjct: 223 ATEHIEPFIVPKGMSMFTSFHLVSSQVQIQMIQSQDLQLQLGTGPVLLNLRGTFHARSNL 282
Query: 273 GGLVPFKYWTRLRCDLRFFWP 293
G L+ + YW +C + P
Sbjct: 283 GSLMRYSYWLHTQCSISLNTP 303
>AT3G26350.1 | chr3:9653660-9654730 REVERSE LENGTH=357
Length = 356
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 60/141 (42%)
Query: 153 QPRAPYLAIRSARLDDLVYDQQGALEAALSLGVAAENGNARSGATFSDFELRLVFHRVVI 212
+PR+PY+ I +A L+ D L L++ N + +S FS L ++ +I
Sbjct: 202 RPRSPYVDISAANLNAAYLDMGFLLNGDLTILANVTNPSKKSSVEFSYVTFELYYYNTLI 261
Query: 213 AILRADPFDVPPKGSLPLGYVVRSSGIPLDSSGMAAMEAALADGVVPFTVSGQASTRWKV 272
A +PF VP K S+ + SS + L ++ ++ + G V + G R +
Sbjct: 262 ATQYIEPFKVPKKTSMFANVHLVSSQVQLQATQSRELQRQIETGPVLLNLRGMFHARSHI 321
Query: 273 GGLVPFKYWTRLRCDLRFFWP 293
G L + Y C + P
Sbjct: 322 GPLFRYSYKLHTHCSVSLNGP 342
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,523,764
Number of extensions: 202787
Number of successful extensions: 458
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 463
Number of HSP's successfully gapped: 3
Length of query: 311
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 213
Effective length of database: 8,419,801
Effective search space: 1793417613
Effective search space used: 1793417613
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)