BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0154200 Os08g0154200|AK103192
(214 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0154200 Conserved hypothetical protein 320 5e-88
Os08g0159900 DEAD/DEAH box helicase, N-terminal domain cont... 288 2e-78
>Os08g0154200 Conserved hypothetical protein
Length = 214
Score = 320 bits (820), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 164/214 (76%), Positives = 164/214 (76%)
Query: 1 DEARRSAKKAQARXXXXXXXXXXXXXXXXXXVRKAGGDLXXXXXXXXXXXXXXXXXXXXX 60
DEARRSAKKAQAR VRKAGGDL
Sbjct: 1 DEARRSAKKAQAREYGYEEDKSDSDSDEEGGVRKAGGDLAAQAIAAAQAAATLAAAKAAS 60
Query: 61 XXXXXXXXXXXGSLLSIPVVANAPNNEATARALQAALNIQQNLARIQAHVVPEHYEVELD 120
GSLLSIPVVANAPNNEATARALQAALNIQQNLARIQAHVVPEHYEVELD
Sbjct: 61 NANQQVQSTNAGSLLSIPVVANAPNNEATARALQAALNIQQNLARIQAHVVPEHYEVELD 120
Query: 121 INDFPQNARWKITHKETLGPIQDWTEAAITTRGTFIPQGKIVGANERKLYLFIEGPTELS 180
INDFPQNARWKITHKETLGPIQDWTEAAITTRGTFIPQGKIVGANERKLYLFIEGPTELS
Sbjct: 121 INDFPQNARWKITHKETLGPIQDWTEAAITTRGTFIPQGKIVGANERKLYLFIEGPTELS 180
Query: 181 VKKAKSELKRVLEDCANHALNLPGSAQTGKYSVI 214
VKKAKSELKRVLEDCANHALNLPGSAQTGKYSVI
Sbjct: 181 VKKAKSELKRVLEDCANHALNLPGSAQTGKYSVI 214
>Os08g0159900 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 1049
Score = 288 bits (737), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 146/214 (68%), Positives = 153/214 (71%)
Query: 1 DEARRSAKKAQARXXXXXXXXXXXXXXXXXXVRKAGGDLXXXXXXXXXXXXXXXXXXXXX 60
DEAR+SAKKAQAR VRKAGGDL
Sbjct: 836 DEARKSAKKAQAREYGYEEDKSDSDSDEEGGVRKAGGDLAAQAIAAAQAAAAMVAAKAAS 895
Query: 61 XXXXXXXXXXXGSLLSIPVVANAPNNEATARALQAALNIQQNLARIQAHVVPEHYEVELD 120
G LL + + +N NNEATARALQAA NIQQNLARIQAH VPEHYE EL+
Sbjct: 896 NANQQTQGTSVGPLLPLAIASNTQNNEATARALQAAFNIQQNLARIQAHAVPEHYEAELE 955
Query: 121 INDFPQNARWKITHKETLGPIQDWTEAAITTRGTFIPQGKIVGANERKLYLFIEGPTELS 180
INDFPQNARWKITHKETLGPIQ+WT AAITTRGTF PQGKIVGANERKLYLFIEGPTELS
Sbjct: 956 INDFPQNARWKITHKETLGPIQEWTGAAITTRGTFFPQGKIVGANERKLYLFIEGPTELS 1015
Query: 181 VKKAKSELKRVLEDCANHALNLPGSAQTGKYSVI 214
VKKAK+ELKRVLEDCANHALNLPGSAQTGKYSVI
Sbjct: 1016 VKKAKAELKRVLEDCANHALNLPGSAQTGKYSVI 1049
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,948,696
Number of extensions: 158341
Number of successful extensions: 233
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 2
Length of query: 214
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 117
Effective length of database: 11,971,043
Effective search space: 1400612031
Effective search space used: 1400612031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)