Os08g0159900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os08g0159900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.91 | 0.257 | 11.2 | 0.0832 | 0.924 | -1.59 | -0.734 | 0.0346 | -0.0311 | 14.1 | 0.36 | 731 | -- | -- |
| 29.91 | 0.255 | 11.2 | 0.0843 | 0.922 | -1.58 | -0.73 | -- | -0.0312 | 14 | 0.3641 | 732 | -- | -- |
| 31.52 | 0.261 | 11.2 | 0.0633 | 1.03 | -1.78 | -- | -0.44 | -0.0203 | 14.5 | 0.3606 | 732 | -- | -- |
| 31.86 | 0.263 | 11.2 | 0.0698 | 0.94 | -1.67 | -- | -- | -0.0344 | 14.3 | 0.36 | 738 | -- | -- |
| 32.59 | 0.266 | 11.2 | 0.134 | -- | -1.76 | -- | 0.074 | 0.0109 | -- | 0.3398 | 1049 | -- | -- |
| 37.01 | 0.285 | 11.2 | -0.0645 | 1.06 | -- | -0.313 | -- | -0.097 | 8.87 | -- | -- | -- | -- |
| 37.33 | 0.286 | 11.2 | -0.0755 | 1.06 | -- | -- | -- | -0.0974 | 8.83 | -- | -- | -- | -- |
| 32.58 | 0.266 | 11.2 | 0.133 | -- | -1.75 | -- | -- | 0.0204 | -- | 0.31 | 1052 | -- | -- |
| 31.98 | 0.263 | 11.2 | -- | 0.926 | -1.64 | -- | -- | -0.0422 | 14.2 | 0.37 | 738 | -- | -- |
| 101.59 | 0.471 | 11.2 | -0.0749 | -- | -- | -- | -- | -0.0896 | -- | -- | -- | -- | -- |
| 37.48 | 0.286 | 11.2 | -- | 1.06 | -- | -- | -- | -0.089 | 8.84 | -- | -- | -- | -- |
| 33.02 | 0.268 | 11.2 | -- | -- | -1.73 | -- | -- | 0.0102 | -- | 0.31 | 1050 | -- | -- |
| 101.74 | 0.471 | 11.2 | -- | -- | -- | -- | -- | -0.0813 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.14 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 10 |
| 2 | 28.59 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 15 |
| 8 | 28.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 19 |
| 10 | 29.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 11 | 29.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 21 | 29.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 3 |
| 39 | 29.54 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 45 | 29.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 18 |
| 47 | 29.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 6 |
| 52 | 29.62 | radiation | 1 | 270 | < th | dose dependent | sin | 13 | NA |
| 59 | 29.68 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 85 | 29.78 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 100 | 29.84 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 118 | 29.89 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 120 | 29.90 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 127 | 29.93 | radiation | 1 | 270 | < th | dose independent | sin | 13 | NA |
| 159 | 30.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 179 | 30.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 183 | 30.06 | radiation | 40 | 10 | < th | dose dependent | rect. | 16 | 19 |
| 188 | 30.08 | radiation | 30 | 10 | < th | dose independent | rect. | 16 | 19 |
| 216 | 30.13 | radiation | 1 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 243 | 30.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 9 |
| 267 | 30.21 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 270 | 30.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 282 | 30.24 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 22 |
| 357 | 30.34 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 379 | 30.37 | humidity | 70 | 270 | > th | dose independent | rect. | 18 | 11 |
| 386 | 30.38 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 15 |
| 409 | 30.41 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 23 |
| 440 | 30.46 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 444 | 30.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 20 |
| 454 | 30.48 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 3 |
| 480 | 30.51 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 16 |
| 508 | 30.56 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 18 |
| 513 | 30.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 14 |
| 517 | 30.57 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 23 |
| 527 | 30.57 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 530 | 30.58 | radiation | 1 | 720 | < th | dose dependent | sin | 3 | NA |
| 531 | 30.58 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 10 |
| 546 | 30.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 622 | 30.68 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 23 |
| 634 | 30.69 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 2 |
| 665 | 30.72 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 16 |
| 687 | 30.75 | humidity | 50 | 270 | > th | dose independent | rect. | 9 | 14 |
| 688 | 30.75 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 18 |
| 700 | 30.76 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 715 | 30.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 721 | 30.77 | radiation | 1 | 270 | > th | dose independent | sin | 13 | NA |
| 723 | 30.77 | radiation | 1 | 270 | > th | dose independent | rect. | 13 | 20 |
| 726 | 30.77 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 23 |
| 746 | 30.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 747 | 30.79 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 797 | 30.79 | radiation | 1 | 720 | < th | dose independent | rect. | 20 | 23 |
| 810 | 30.80 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 9 | 5 |
| 816 | 30.80 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 839 | 30.83 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 23 |
| 863 | 30.85 | temperature | 15 | 30 | > th | dose independent | rect. | 16 | 19 |
| 865 | 30.85 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 21 |
| 876 | 30.86 | radiation | 1 | 270 | < th | dose independent | rect. | 19 | 16 |
| 889 | 30.87 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 890 | 30.87 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 19 |
| 935 | 30.89 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 937 | 30.90 | radiation | 1 | 270 | > th | dose independent | rect. | 15 | 17 |
| 988 | 30.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 995 | 30.93 | radiation | 40 | 270 | < th | dose independent | rect. | 23 | 10 |