BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0130900 Os08g0130900|J100045O14
(87 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0130900 Glycosyl transferase, family 31 protein 180 2e-46
Os03g0803900 Galectin, galactose-binding lectin family protein 80 2e-16
AK111213 79 9e-16
Os07g0195200 Similar to ZG10 (Fragment) 76 4e-15
>Os08g0130900 Glycosyl transferase, family 31 protein
Length = 87
Score = 180 bits (457), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 GDCCDLIHYKLWLQNSRKEVNVMLKREAEYFGDIVILPFIDRYELVVLKTIAICEYGVSH 60
GDCCDLIHYKLWLQNSRKEVNVMLKREAEYFGDIVILPFIDRYELVVLKTIAICEYGVSH
Sbjct: 1 GDCCDLIHYKLWLQNSRKEVNVMLKREAEYFGDIVILPFIDRYELVVLKTIAICEYGVSH 60
Query: 61 SCLIFYCCSSANILNQSKNSCMPVQKL 87
SCLIFYCCSSANILNQSKNSCMPVQKL
Sbjct: 61 SCLIFYCCSSANILNQSKNSCMPVQKL 87
>Os03g0803900 Galectin, galactose-binding lectin family protein
Length = 655
Score = 80.5 bits (197), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/44 (79%), Positives = 41/44 (93%)
Query: 15 NSRKEVNVMLKREAEYFGDIVILPFIDRYELVVLKTIAICEYGV 58
NSRKEVN LK+EAE+FGDIVI+PF+D Y+LVVLKT+AICEYGV
Sbjct: 451 NSRKEVNAELKKEAEFFGDIVIVPFMDSYDLVVLKTVAICEYGV 494
>AK111213
Length = 395
Score = 78.6 bits (192), Expect = 9e-16, Method: Composition-based stats.
Identities = 34/44 (77%), Positives = 39/44 (88%)
Query: 17 RKEVNVMLKREAEYFGDIVILPFIDRYELVVLKTIAICEYGVSH 60
RKE+N LK EA+YFGD VILPFIDRYELVVLKT+AICE+GV +
Sbjct: 193 RKEINAALKTEADYFGDFVILPFIDRYELVVLKTVAICEFGVQN 236
>Os07g0195200 Similar to ZG10 (Fragment)
Length = 663
Score = 76.3 bits (186), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/44 (75%), Positives = 40/44 (90%)
Query: 15 NSRKEVNVMLKREAEYFGDIVILPFIDRYELVVLKTIAICEYGV 58
+ RKEVNV LK+EAE+FGDIV +PF+D Y+LVVLKT+AICEYGV
Sbjct: 459 HGRKEVNVELKKEAEFFGDIVFVPFLDNYDLVVLKTLAICEYGV 502
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.141 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,651,056
Number of extensions: 78877
Number of successful extensions: 215
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 4
Length of query: 87
Length of database: 17,035,801
Length adjustment: 57
Effective length of query: 30
Effective length of database: 14,059,603
Effective search space: 421788090
Effective search space used: 421788090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)