BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0117900 Os08g0117900|AK102753
         (328 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0117900  Conserved hypothetical protein                      560   e-160
Os06g0134900  Conserved hypothetical protein                      188   6e-48

>Os08g0117900 Conserved hypothetical protein
          Length = 328

 Score =  560 bits (1442), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 279/303 (92%), Positives = 279/303 (92%)

Query: 26  QPGSLMSSFFGGAXXXXXXXXXXXXGAMMGPSLLQPXXXXXXXXXXXXPHGNVNGLSNTG 85
           QPGSLMSSFFGGA            GAMMGPSLLQP            PHGNVNGLSNTG
Sbjct: 26  QPGSLMSSFFGGANPFDDPFFTNPFGAMMGPSLLQPSMFGSFGSSMFGPHGNVNGLSNTG 85

Query: 86  GFLQQAPEPSRPRGPIIQELSSDDEDGADVNKEDEKRNDNPRKHPRMAQMPYVEDPDEDT 145
           GFLQQAPEPSRPRGPIIQELSSDDEDGADVNKEDEKRNDNPRKHPRMAQMPYVEDPDEDT
Sbjct: 86  GFLQQAPEPSRPRGPIIQELSSDDEDGADVNKEDEKRNDNPRKHPRMAQMPYVEDPDEDT 145

Query: 146 EDNKRSRHEQFERGYARASTSRPQPHTFMFQSSTVTYGGPNGACYTSSATRRTGGDGVTF 205
           EDNKRSRHEQFERGYARASTSRPQPHTFMFQSSTVTYGGPNGACYTSSATRRTGGDGVTF
Sbjct: 146 EDNKRSRHEQFERGYARASTSRPQPHTFMFQSSTVTYGGPNGACYTSSATRRTGGDGVTF 205

Query: 206 EERKEADTTTGKATHRISRGIGNKGHSLTRKLSSDGNVDTMQTLHNLNEDELARFEESWQ 265
           EERKEADTTTGKATHRISRGIGNKGHSLTRKLSSDGNVDTMQTLHNLNEDELARFEESWQ
Sbjct: 206 EERKEADTTTGKATHRISRGIGNKGHSLTRKLSSDGNVDTMQTLHNLNEDELARFEESWQ 265

Query: 266 RNAVQNLSGWDPRVNMLGTGTARSGIRDGNQMLTLPAPGPGQSRGASSSRTKRPTQNTSS 325
           RNAVQNLSGWDPRVNMLGTGTARSGIRDGNQMLTLPAPGPGQSRGASSSRTKRPTQNTSS
Sbjct: 266 RNAVQNLSGWDPRVNMLGTGTARSGIRDGNQMLTLPAPGPGQSRGASSSRTKRPTQNTSS 325

Query: 326 RRT 328
           RRT
Sbjct: 326 RRT 328



>Os06g0134900 Conserved hypothetical protein
          Length = 300

 Score =  188 bits (477), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 117/247 (47%), Positives = 146/247 (59%), Gaps = 31/247 (12%)

Query: 29  SLMSSFFGGAXXXXXXXXXXXXGA-MMGPSLLQPXXXXXXXXXXXXPHGNVNGLSNTGGF 87
           SL+S  FGG             G+ M GPSL  P            P G++       GF
Sbjct: 29  SLISGVFGGRDPFDDPFFNQPFGSGMHGPSLFGPMGG---------PFGDIR----NDGF 75

Query: 88  LQQAPEPSRPRGPIIQELSSDDEDGADVNKEDEKRNDNPRKHPRMAQMPYVEDPDEDTED 147
           L+QAP     R  II EL             DE+  +N  +  +  + PYV++PD++ + 
Sbjct: 76  LEQAPPRGNGRKLIITEL-------------DEEEGENSGRQRQANREPYVQEPDDEMQG 122

Query: 148 NKRSRHEQFERGYARASTSRPQPHTFMFQSSTVTYGGPNGACYTSSATRRTGGDGVTFEE 207
            +     Q  R + RA+  +PQ  TF +QSS+VTYGG NGA YT+S TRRTG DG+T EE
Sbjct: 123 GQL----QPRRDFNRANEGQPQARTFTYQSSSVTYGGVNGAYYTASKTRRTGSDGITVEE 178

Query: 208 RKEADTTTGKATHRISRGIGNKGHSLTRKLSSDGNVDTMQTLHNLNEDELARFEESWQRN 267
            KEADTTT +ATHRISRGI +KGHSLTRKL SDGNVDT Q LHNL+EDELA FEESW+ N
Sbjct: 179 SKEADTTTKEATHRISRGIHDKGHSLTRKLKSDGNVDTTQILHNLHEDELAGFEESWKGN 238

Query: 268 AVQNLSG 274
           A  +L+G
Sbjct: 239 ARHHLAG 245



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.128    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,194,591
Number of extensions: 515566
Number of successful extensions: 1876
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1874
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 227
Effective length of database: 11,762,187
Effective search space: 2670016449
Effective search space used: 2670016449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 156 (64.7 bits)