Os06g0134900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0134900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.9 | 0.228 | 13.3 | 0.786 | 0.604 | 0.398 | 0.0501 | -0.368 | 0.0198 | 10.5 | 20 | 90 | -- | -- |
| 24.46 | 0.23 | 13.3 | 0.726 | 0.604 | 0.433 | 0.142 | -- | 0.00818 | 10.6 | 19.97 | 93 | -- | -- |
| 23.91 | 0.228 | 13.3 | 0.79 | 0.604 | 0.397 | -- | -0.38 | 0.0206 | 10.5 | 19.96 | 90 | -- | -- |
| 24.55 | 0.231 | 13.3 | 0.734 | 0.605 | 0.432 | -- | -- | 0.00849 | 10.5 | 19.96 | 90 | -- | -- |
| 42.36 | 0.303 | 13.3 | 0.823 | -- | 0.414 | -- | -0.363 | 0.0504 | -- | 20.57 | 579 | -- | -- |
| 30.93 | 0.261 | 13.3 | 0.605 | 0.55 | -- | 0.169 | -- | -0.066 | 10.1 | -- | -- | -- | -- |
| 31.04 | 0.261 | 13.3 | 0.611 | 0.549 | -- | -- | -- | -0.0658 | 10.1 | -- | -- | -- | -- |
| 36.47 | 0.281 | 13.3 | 0.779 | -- | 0.519 | -- | -- | 0.125 | -- | 24.8 | 712 | -- | -- |
| 37.91 | 0.287 | 13.3 | -- | 0.622 | 0.31 | -- | -- | -0.0779 | 10.3 | 20.2 | 117 | -- | -- |
| 49.25 | 0.328 | 13.3 | 0.604 | -- | -- | -- | -- | -0.0664 | -- | -- | -- | -- | -- |
| 40.89 | 0.299 | 13.3 | -- | 0.547 | -- | -- | -- | -0.134 | 9.98 | -- | -- | -- | -- |
| 51.07 | 0.333 | 13.3 | -- | -- | 0.389 | -- | -- | 0.00168 | -- | 24.93 | 662 | -- | -- |
| 58.89 | 0.358 | 13.3 | -- | -- | -- | -- | -- | -0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.23 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 19 |
| 14 | 19.14 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 18 |
| 40 | 20.62 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 18 |
| 57 | 21.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 20 |
| 85 | 21.73 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 6 |
| 103 | 22.09 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 112 | 22.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 7 |
| 168 | 22.90 | temperature | 20 | 90 | > th | dose independent | sin | 15 | NA |
| 178 | 22.96 | temperature | 20 | 90 | < th | dose independent | sin | 15 | NA |
| 182 | 22.99 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 12 |
| 191 | 23.04 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 11 |
| 205 | 23.09 | temperature | 25 | 270 | < th | dose dependent | sin | 17 | NA |
| 221 | 23.19 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 10 |
| 258 | 23.34 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 8 |
| 270 | 23.40 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 5 |
| 295 | 23.47 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 18 |
| 297 | 23.48 | temperature | 25 | 10 | < th | dose dependent | sin | 15 | NA |
| 303 | 23.49 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 14 |
| 312 | 23.51 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 20 |
| 313 | 23.51 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 22 |
| 319 | 23.52 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 11 |
| 322 | 23.53 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 23 |
| 328 | 23.54 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 10 |
| 340 | 23.56 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 12 |
| 341 | 23.56 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 20 |
| 380 | 23.64 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 11 | 17 |
| 396 | 23.67 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 5 |
| 408 | 23.68 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 14 |
| 418 | 23.70 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 15 |
| 437 | 23.73 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 22 |
| 472 | 23.78 | temperature | 20 | 90 | < th | dose independent | rect. | 7 | 22 |
| 478 | 23.79 | temperature | 20 | 90 | < th | dose independent | rect. | 9 | 22 |
| 479 | 23.79 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 23 |
| 487 | 23.80 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 5 |
| 498 | 23.80 | temperature | 20 | 90 | < th | dose independent | rect. | 9 | 20 |
| 516 | 23.82 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 10 |
| 596 | 23.90 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 622 | 23.93 | radiation | 1 | 90 | > th | dose independent | sin | 5 | NA |
| 631 | 23.94 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 646 | 23.95 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 23 |
| 677 | 23.99 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 22 | 7 |
| 691 | 24.00 | radiation | 10 | 90 | < th | dose dependent | sin | 7 | NA |
| 695 | 24.01 | radiation | 1 | 90 | < th | dose independent | sin | 5 | NA |
| 696 | 24.01 | humidity | 90 | 90 | < th | dose independent | rect. | 5 | 6 |
| 711 | 24.02 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 753 | 24.07 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 23 |
| 797 | 24.11 | radiation | 1 | 270 | > th | dose independent | sin | 9 | NA |
| 798 | 24.11 | radiation | 1 | 270 | < th | dose independent | sin | 9 | NA |
| 802 | 24.11 | radiation | 1 | 90 | < th | dose independent | rect. | 1 | 14 |
| 843 | 24.14 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 9 | 20 |
| 967 | 24.22 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 971 | 24.23 | radiation | 1 | 90 | < th | dose independent | rect. | 1 | 7 |
| 988 | 24.23 | temperature | 20 | 30 | < th | dose independent | rect. | 23 | 23 |