BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0134900 Os06g0134900|AK103205
(300 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0134900 Conserved hypothetical protein 525 e-149
Os08g0117900 Conserved hypothetical protein 194 6e-50
>Os06g0134900 Conserved hypothetical protein
Length = 300
Score = 525 bits (1352), Expect = e-149, Method: Compositional matrix adjust.
Identities = 262/274 (95%), Positives = 262/274 (95%)
Query: 27 QRSLISGVFGGRXXXXXXXXXXXXGSGMHGPSLFGPMGGPFGDIRNDGFLEQAPPRGNGR 86
QRSLISGVFGGR GSGMHGPSLFGPMGGPFGDIRNDGFLEQAPPRGNGR
Sbjct: 27 QRSLISGVFGGRDPFDDPFFNQPFGSGMHGPSLFGPMGGPFGDIRNDGFLEQAPPRGNGR 86
Query: 87 KLIITELDEEEGENSGRQRQANREPYVQEPDDEMQGGQLQPRRDFNRANEGQPQARTFTY 146
KLIITELDEEEGENSGRQRQANREPYVQEPDDEMQGGQLQPRRDFNRANEGQPQARTFTY
Sbjct: 87 KLIITELDEEEGENSGRQRQANREPYVQEPDDEMQGGQLQPRRDFNRANEGQPQARTFTY 146
Query: 147 QSSSVTYGGVNGAYYTASKTRRTGSDGITVEESKEADTTTKEATHRISRGIHDKGHSLTR 206
QSSSVTYGGVNGAYYTASKTRRTGSDGITVEESKEADTTTKEATHRISRGIHDKGHSLTR
Sbjct: 147 QSSSVTYGGVNGAYYTASKTRRTGSDGITVEESKEADTTTKEATHRISRGIHDKGHSLTR 206
Query: 207 KLKSDGNVDTTQILHNLHEDELAGFEESWKGNARHHLAGLNQNAGTSNNNEPGNRGTSGR 266
KLKSDGNVDTTQILHNLHEDELAGFEESWKGNARHHLAGLNQNAGTSNNNEPGNRGTSGR
Sbjct: 207 KLKSDGNVDTTQILHNLHEDELAGFEESWKGNARHHLAGLNQNAGTSNNNEPGNRGTSGR 266
Query: 267 GRQSAWGWALPGREQGRDQRRNGERPKSRVIPIS 300
GRQSAWGWALPGREQGRDQRRNGERPKSRVIPIS
Sbjct: 267 GRQSAWGWALPGREQGRDQRRNGERPKSRVIPIS 300
>Os08g0117900 Conserved hypothetical protein
Length = 328
Score = 194 bits (494), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 119/247 (48%), Positives = 148/247 (59%), Gaps = 31/247 (12%)
Query: 29 SLISGVFGGRXXXXXXXXXXXXGSGMHGPSLFGP---------MGGPFGDIR----NDGF 75
SL+S FGG G+ M GPSL P M GP G++ GF
Sbjct: 29 SLMSSFFGGANPFDDPFFTNPFGA-MMGPSLLQPSMFGSFGSSMFGPHGNVNGLSNTGGF 87
Query: 76 LEQAPPRGNGRKLIITEL-------------DEEEGENSGRQRQANREPYVQEPDDEMQG 122
L+QAP R II EL DE+ +N + + + PYV++PD++ +
Sbjct: 88 LQQAPEPSRPRGPIIQELSSDDEDGADVNKEDEKRNDNPRKHPRMAQMPYVEDPDEDTED 147
Query: 123 GQL----QPRRDFNRANEGQPQARTFTYQSSSVTYGGVNGAYYTASKTRRTGSDGITVEE 178
+ Q R + RA+ +PQ TF +QSS+VTYGG NGA YT+S TRRTG DG+T EE
Sbjct: 148 NKRSRHEQFERGYARASTSRPQPHTFMFQSSTVTYGGPNGACYTSSATRRTGGDGVTFEE 207
Query: 179 SKEADTTTKEATHRISRGIHDKGHSLTRKLKSDGNVDTTQILHNLHEDELAGFEESWKGN 238
KEADTTT +ATHRISRGI +KGHSLTRKL SDGNVDT Q LHNL+EDELA FEESW+ N
Sbjct: 208 RKEADTTTGKATHRISRGIGNKGHSLTRKLSSDGNVDTMQTLHNLNEDELARFEESWQRN 267
Query: 239 ARHHLAG 245
A +L+G
Sbjct: 268 AVQNLSG 274
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,932,394
Number of extensions: 546798
Number of successful extensions: 1409
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1407
Number of HSP's successfully gapped: 2
Length of query: 300
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 200
Effective length of database: 11,814,401
Effective search space: 2362880200
Effective search space used: 2362880200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 156 (64.7 bits)