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Os08g0117900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0188) R2 : 0.409
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.64 (0.0493) R2dC : 0.22 R2C : 0.174
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.47 (0.0396) R2dN8 : 0.235 R2N8 : 0.19
σ : 0.355
deviance : 57.66
__
_____
C
peak time of C : 6.54
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.28 0.277 10.5 0.813 0.751 -0.624 0.594 -1.39 0.495 5.74 30 10 -- --
37.59 0.288 10.5 0.588 0.736 -0.614 0.354 -- 0.434 5.77 30 10 -- --
35.76 0.281 10.5 0.783 0.756 -0.652 -- -1.22 0.479 5.53 30 10 -- --
37.82 0.288 10.5 0.582 0.744 -0.644 -- -- 0.426 5.57 30 10 -- --
60.41 0.362 10.5 0.807 -- -0.437 -- -1.01 0.535 -- 24.2 2 -- --
42.25 0.305 10.5 0.722 0.621 -- 0.761 -- 0.555 7.04 -- -- -- --
43.45 0.309 10.5 0.734 0.631 -- -- -- 0.552 6.61 -- -- -- --
62.19 0.367 10.5 0.672 -- -0.35 -- -- 0.507 -- 24.19 2 -- --
45.88 0.317 10.6 -- 0.807 -0.885 -- -- 0.321 5.24 30 10 -- --
64.18 0.374 10.5 0.749 -- -- -- -- 0.564 -- -- -- -- --
57.66 0.355 10.5 -- 0.64 -- -- -- 0.47 6.54 -- -- -- --
73.2 0.398 10.6 -- -- -0.574 -- -- 0.401 -- 24.2 2 -- --
79 0.415 10.5 -- -- -- -- -- 0.481 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.54 temperature 10.0 90 > th dose dependent rect. 6 17
2 30.64 temperature 10.0 10 > th dose dependent rect. 6 17
3 30.73 temperature 10.0 270 > th dose dependent rect. 3 7
7 30.85 temperature 10.0 10 > th dose dependent rect. 18 17
21 31.59 temperature 15.0 90 > th dose dependent rect. 5 6
23 31.64 temperature 15.0 10 > th dose dependent rect. 20 15
61 32.44 temperature 15.0 10 > th dose independent rect. 18 17
62 32.44 temperature 15.0 90 > th dose independent rect. 17 18
65 32.49 wind 1.0 90 > th dose independent rect. 11 6
71 32.58 wind 9.0 270 < th dose dependent rect. 3 8
72 32.59 wind 1.0 10 > th dose independent rect. 11 7
75 32.62 temperature 30.0 30 < th dose independent rect. 11 7
80 32.67 humidity 50.0 90 > th dose independent rect. 11 6
93 32.79 radiation 10.0 90 < th dose dependent rect. 23 16
96 32.84 temperature 15.0 270 > th dose independent rect. 17 16
104 32.89 wind 1.0 270 > th dose independent rect. 9 8
113 32.97 radiation 20.0 10 < th dose dependent sin 9 NA
114 32.98 temperature 15.0 10 > th dose dependent sin 6 NA
116 33.00 temperature 20.0 270 > th dose independent rect. 3 7
128 33.08 radiation 10.0 90 < th dose dependent rect. 23 18
132 33.11 wind 9.0 10 < th dose independent rect. 11 7
140 33.14 atmosphere 995.0 90 > th dose independent rect. 17 18
142 33.15 temperature 10.0 10 > th dose independent rect. 11 7
144 33.15 atmosphere 1015.0 10 < th dose independent rect. 11 7
146 33.15 humidity 50.0 10 > th dose independent rect. 18 17
147 33.15 atmosphere 995.0 10 > th dose independent rect. 18 17
151 33.16 wind 9.0 90 < th dose independent rect. 11 6
152 33.16 wind 9.0 10 < th dose independent rect. 18 17
156 33.18 atmosphere 1010.0 90 < th dose independent rect. 17 18
158 33.20 temperature 10.0 90 > th dose independent rect. 11 6
159 33.20 atmosphere 1015.0 90 < th dose independent rect. 11 6
163 33.21 wind 9.0 90 < th dose independent rect. 17 18
165 33.22 precipitation 0.1 10 < th dose independent rect. 11 7
167 33.22 precipitation 0.1 10 < th dose dependent rect. 11 7
171 33.25 radiation 1.0 270 < th dose independent sin 11 NA
172 33.25 precipitation 0.1 90 < th dose independent rect. 17 18
173 33.25 precipitation 0.1 90 < th dose dependent rect. 17 18
174 33.26 wind 5.0 270 < th dose independent rect. 3 7
194 33.32 precipitation 0.1 90 < th dose independent rect. 11 6
196 33.32 precipitation 0.1 90 < th dose dependent rect. 11 6
203 33.35 precipitation 0.1 270 < th dose independent rect. 3 7
204 33.35 precipitation 0.1 270 < th dose dependent rect. 3 7
206 33.37 precipitation 0.1 10 < th dose independent rect. 18 17
207 33.37 precipitation 0.1 10 < th dose dependent rect. 18 17
210 33.38 radiation 20.0 90 < th dose dependent sin 10 NA
221 33.43 atmosphere 995.0 90 > th dose independent rect. 11 6
225 33.45 atmosphere 1015.0 10 < th dose independent rect. 18 17
232 33.48 temperature 15.0 10 > th dose dependent rect. 5 7
239 33.50 atmosphere 995.0 10 > th dose independent rect. 11 7
240 33.50 wind 9.0 270 < th dose independent rect. 10 17
256 33.55 temperature 20.0 270 > th dose independent rect. 5 16
261 33.56 temperature 15.0 270 > th dose dependent rect. 7 1
262 33.56 temperature 30.0 10 < th dose dependent rect. 23 21
264 33.57 atmosphere 995.0 270 > th dose independent rect. 3 7
265 33.57 atmosphere 1015.0 270 < th dose independent rect. 3 7
267 33.57 temperature 10.0 270 > th dose independent rect. 10 17
269 33.57 radiation 1.0 270 < th dose dependent sin 11 NA
271 33.59 humidity 50.0 270 > th dose independent rect. 3 7
274 33.60 wind 1.0 270 > th dose independent rect. 10 17
281 33.61 wind 9.0 270 < th dose independent rect. 9 8
285 33.63 atmosphere 995.0 270 > th dose independent rect. 17 16
288 33.64 temperature 10.0 270 > th dose independent rect. 9 8
289 33.64 atmosphere 1015.0 270 < th dose independent rect. 9 8
298 33.67 radiation 40.0 270 < th dose independent rect. 17 15
307 33.69 radiation 1.0 270 > th dose independent sin 10 NA
308 33.69 wind 9.0 270 < th dose independent rect. 17 16
319 33.72 precipitation 0.1 270 < th dose independent rect. 10 17
322 33.72 precipitation 0.1 270 < th dose dependent rect. 10 17
325 33.73 wind 9.0 30 < th dose dependent rect. 18 17
339 33.77 wind 1.0 270 > th dose independent rect. 23 16
342 33.77 atmosphere 995.0 90 > th dose dependent rect. 11 6
346 33.78 precipitation 0.1 270 < th dose independent rect. 9 8
348 33.78 precipitation 0.1 270 < th dose dependent rect. 9 8
356 33.79 temperature 30.0 10 < th dose dependent rect. 23 19
358 33.80 temperature 25.0 10 > th dose dependent sin 8 NA
361 33.81 radiation 1.0 90 > th dose independent rect. 11 6
374 33.83 precipitation 0.1 270 < th dose independent rect. 17 16
375 33.83 precipitation 0.1 270 < th dose dependent rect. 17 16
381 33.85 humidity 50.0 270 > th dose independent rect. 9 8
423 33.97 temperature 10.0 1440 > th dose independent rect. 12 7
428 33.97 temperature 10.0 1440 > th dose independent rect. 19 17
431 33.97 atmosphere 995.0 1440 > th dose independent rect. 19 17
432 33.97 radiation 1.0 90 > th dose independent rect. 18 17
472 34.04 humidity 50.0 270 > th dose independent rect. 17 16
481 34.06 atmosphere 995.0 270 > th dose independent rect. 9 7
488 34.07 temperature 25.0 90 > th dose independent rect. 17 18
494 34.08 radiation 1.0 270 < th dose dependent rect. 21 21
499 34.09 radiation 1.0 90 > th dose independent rect. 4 7
512 34.09 atmosphere 995.0 10 > th dose dependent rect. 11 7
588 34.20 radiation 1.0 270 < th dose dependent rect. 21 13
594 34.21 radiation 20.0 10 < th dose dependent rect. 23 10
620 34.24 radiation 1.0 270 > th dose independent rect. 9 7
625 34.24 radiation 1.0 270 < th dose independent rect. 21 19
640 34.27 temperature 15.0 10 > th dose independent rect. 20 15
641 34.27 radiation 1.0 270 < th dose independent rect. 21 16
652 34.29 radiation 1.0 270 < th dose independent rect. 21 13
675 34.31 radiation 1.0 270 < th dose independent rect. 21 10
708 34.35 temperature 30.0 10 < th dose dependent rect. 11 19
713 34.37 wind 9.0 270 < th dose independent rect. 15 19
740 34.40 atmosphere 995.0 270 > th dose independent rect. 15 19
757 34.42 precipitation 0.1 270 < th dose independent rect. 15 19
759 34.42 precipitation 0.1 270 < th dose dependent rect. 15 19
777 34.45 wind 1.0 270 > th dose independent rect. 9 20
822 34.50 wind 1.0 10 > th dose independent rect. 11 9
826 34.50 wind 1.0 90 > th dose dependent rect. 11 6
909 34.58 temperature 30.0 10 < th dose dependent sin 7 NA
928 34.61 radiation 1.0 90 < th dose independent rect. 23 17
938 34.62 radiation 40.0 270 < th dose independent rect. 3 7
939 34.62 temperature 15.0 270 > th dose independent rect. 15 8
961 34.64 atmosphere 1015.0 270 < th dose independent rect. 5 16
981 34.66 temperature 10.0 270 > th dose dependent rect. 15 8