BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0117900 Os08g0117900|AK102753
(328 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G22740.1 | chr4:11944050-11945565 REVERSE LENGTH=357 160 6e-40
AT2G45380.1 | chr2:18699588-18703093 REVERSE LENGTH=495 146 1e-35
>AT4G22740.1 | chr4:11944050-11945565 REVERSE LENGTH=357
Length = 356
Score = 160 bits (406), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 164/323 (50%), Gaps = 56/323 (17%)
Query: 29 SLMSSFFGGAXXXXXXXXXXXXGAMM------GPSLLQPXXXXXXXXXXXXPHGNVNGLS 82
SLMS+FFGG G M GPS+ P ++ L
Sbjct: 45 SLMSNFFGGRDPFDDPFFTQPFGGGMFQSNFFGPSM--------------NPFAEMHRLP 90
Query: 83 NTGGFLQ--QAPEPSRPRGPIIQELSSDDEDGADVNKED--------------------- 119
GF++ Q P PSR RGP+I+E+ SDDE + +KE
Sbjct: 91 Q--GFIENNQPPGPSRSRGPVIEEIDSDDEKEGEGDKEKKGSLGKHGRSSSEAETEDARV 148
Query: 120 -EKRNDNPRKHPRMAQMPYVEDPDEDTEDNKRSRHEQFERGYARASTSRPQPHT--FMFQ 176
E+RN + A+ E + + +R+ Q A + + QP T + FQ
Sbjct: 149 RERRNRQMQSMNVNAERRNREMQNMNVNAERRNPQMQNMNVNAMVNNGQWQPQTGSYSFQ 208
Query: 177 SSTVTYGGPNGACYTSSATRRTGGDGVTFEERKEADTTTGKATHRISRGIGNKGHSLTRK 236
SSTVTYGG NG YTSS TRRTG DG+T EE +EA+T T +A H ISRG+ NKGH++ RK
Sbjct: 209 SSTVTYGGQNGNYYTSSKTRRTGSDGLTLEESREANTATREAAHMISRGLHNKGHTVARK 268
Query: 237 LSSDGNVDTMQTLHNLNEDELARFEESWQRNAVQNLSGWDPRVNMLGTGTARSGIRDGNQ 296
L+SDG VDT QTLHNLNEDELA FE+SW NA + + R +G+ SG+ + Q
Sbjct: 269 LNSDGRVDTTQTLHNLNEDELAGFEQSWSGNARRQMQ-LPSR-----SGSFGSGLVNREQ 322
Query: 297 MLTLPA--PGPGQSRGASSSRTK 317
+ LP+ P P +R SS R K
Sbjct: 323 PMLLPSTDPSPSHARAESSRRPK 345
>AT2G45380.1 | chr2:18699588-18703093 REVERSE LENGTH=495
Length = 494
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 114/173 (65%), Gaps = 9/173 (5%)
Query: 98 RGPIIQELSSDDE--DGADVNKEDEKRNDNPRKHPRMAQMPYVEDPDEDTEDNKRSRHEQ 155
RG I+EL SD+E + D+ +D++ H P VE P++D++ ++ ++
Sbjct: 277 RGLTIEELPSDEEVEERKDIGIDDQE-------HASSVNKPSVEHPEDDSDAERKIQNVN 329
Query: 156 FERGYARASTSRPQPHTFMFQSSTVTYGGPNGACYTSSATRRTGGDGVTFEERKEADTTT 215
+ R ++ + +TF S VTYGG +GA YTS+ TRR GDG+ EE KEAD TT
Sbjct: 330 QRSDFNRREGTQSRANTFRHHISKVTYGGIHGAYYTSTRTRRKDGDGMVVEESKEADKTT 389
Query: 216 GKATHRISRGIGNKGHSLTRKLSSDGNVDTMQTLHNLNEDELARFEESWQRNA 268
G+ATHRISRGI +KGHS+TRKL+S G V++ QTLHNL+EDEL+ FEE+W+ N+
Sbjct: 390 GEATHRISRGINDKGHSVTRKLNSSGGVESTQTLHNLDEDELSGFEEAWKGNS 442
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.128 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,704,064
Number of extensions: 298527
Number of successful extensions: 1099
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1096
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,392,385
Effective search space: 1921856165
Effective search space used: 1921856165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 112 (47.8 bits)