BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0114100 Os08g0114100|AK099560
         (261 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0114100  Conserved hypothetical protein                      457   e-129
Os11g0587000                                                      160   8e-40
Os05g0131100  Conserved hypothetical protein                      113   2e-25

>Os08g0114100 Conserved hypothetical protein
          Length = 261

 Score =  457 bits (1175), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/247 (93%), Positives = 231/247 (93%)

Query: 15  WSRVPSAGRRVRCAATAPAPMGEKTEYRDGPVERAFMGLFARKMEKYAVVXXXXXXXXXX 74
           WSRVPSAGRRVRCAATAPAPMGEKTEYRDGPVERAFMGLFARKMEKYAVV          
Sbjct: 15  WSRVPSAGRRVRCAATAPAPMGEKTEYRDGPVERAFMGLFARKMEKYAVVSSSGGKGKEK 74

Query: 75  XXXXXXRSVWEWDYESFVDVSRRVMVGRTRAQQQEAVREVLLSMLPPGAPEQFKKLFPPT 134
                 RSVWEWDYESFVDVSRRVMVGRTRAQQQEAVREVLLSMLPPGAPEQFKKLFPPT
Sbjct: 75  KKEKSSRSVWEWDYESFVDVSRRVMVGRTRAQQQEAVREVLLSMLPPGAPEQFKKLFPPT 134

Query: 135 RWACEFNAALTVPFFHWLVGPSEVVEVEVNGVKQKSGVLIKKCRYLENSGCVGMCVNMCK 194
           RWACEFNAALTVPFFHWLVGPSEVVEVEVNGVKQKSGVLIKKCRYLENSGCVGMCVNMCK
Sbjct: 135 RWACEFNAALTVPFFHWLVGPSEVVEVEVNGVKQKSGVLIKKCRYLENSGCVGMCVNMCK 194

Query: 195 IPTQNFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPLEEDPASKQPCYANLCSISTPSAP 254
           IPTQNFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPLEEDPASKQPCYANLCSISTPSAP
Sbjct: 195 IPTQNFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPLEEDPASKQPCYANLCSISTPSAP 254

Query: 255 ICPKLQT 261
           ICPKLQT
Sbjct: 255 ICPKLQT 261



>Os11g0587000 
          Length = 236

 Score =  160 bits (405), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 90/218 (41%), Positives = 124/218 (56%), Gaps = 23/218 (10%)

Query: 30  TAPAPMGEKTEYRDGPVERAFMGLFARKMEKYAVVXXXXXXXXXXXXXXXXRSVWEWD-Y 88
           TA AP    T YRD   ++  +G  +R +++ + +                    E D Y
Sbjct: 29  TAAAPPA--TVYRDSWFDKLAIGYLSRNLQEASGLKN------------------EKDGY 68

Query: 89  ESFVDVSRRVMVGRTRAQQQEAVREVLLSMLPPGAPEQFKKLFPPTRWACEFNAALTVPF 148
           ES +D +  +    +  +Q E V + L   LP       K + PP+R++ E+ AA T  F
Sbjct: 69  ESLIDAALAISRIFSLDKQSEIVTQALERALPSYILTMIKVMMPPSRFSREYFAAFTTIF 128

Query: 149 FHWLVGPSEVVEVEVNGVKQKSGVLIKKCRYLENSGCVGMCVNMCKIPTQNFFTNEFGLP 208
           F WLVGP EV+E EV G K+K+ V I KCR+LE++ CVGMC N+CKIP Q F  +  G+ 
Sbjct: 129 FPWLVGPCEVMESEVEGRKEKNVVYIPKCRFLESTNCVGMCTNLCKIPCQKFIQDSLGMK 188

Query: 209 LTMNPNFEDMSCEMIYGQVPPPLEEDPASKQPCYANLC 246
           + M+PNFEDMSCEMI+GQ PP  E+DPA KQPC+   C
Sbjct: 189 VYMSPNFEDMSCEMIFGQQPP--EDDPALKQPCFRTKC 224



>Os05g0131100 Conserved hypothetical protein
          Length = 270

 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 99/172 (57%), Gaps = 11/172 (6%)

Query: 86  WD-----YESFVDVSRRVMV-GRTRAQQQEAVREVLLSMLPPGAPEQFKKLFPPT---RW 136
           WD     Y   ++V+ R+M+ G++  + +++   VL S+ PP     FK L  P    + 
Sbjct: 78  WDSEKPGYNGLIEVANRLMIKGKSALETEQSAVRVLRSLFPPLLLVLFKALLAPIANGQL 137

Query: 137 ACEFNAALTVPFFHWLVGPSEVVEVEV-NGVKQKSGVLIKKCRYLENSGCVGMCVNMCKI 195
           A    A  T     WL+GP  +  + + NG    SGV ++KC+YLE S C+G+C+N CK+
Sbjct: 138 ASMMVARATALSCQWLMGPCLLNSITLSNGKSLSSGVFVEKCKYLEESKCLGVCINTCKL 197

Query: 196 PTQNFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPLEEDPASKQPCYANLCS 247
           PTQ FF +  G+ L M PNFED SC+  +G  PPPL+ D A K+PC  ++C+
Sbjct: 198 PTQTFFKDHMGVDLYMEPNFEDYSCQFNFGVSPPPLDTDKALKEPCL-DICT 248



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,167,543
Number of extensions: 373563
Number of successful extensions: 865
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 863
Number of HSP's successfully gapped: 4
Length of query: 261
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 162
Effective length of database: 11,866,615
Effective search space: 1922391630
Effective search space used: 1922391630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)