Os05g0131100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0131100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.89 | 0.308 | 11.1 | -1.44 | 0.0681 | 0.655 | 0.542 | 0.711 | -0.592 | 15.7 | 25.3 | 5877 | -- | -- |
| 43.08 | 0.306 | 11.1 | -1.64 | 0.0646 | 0.712 | 0.533 | -- | -0.649 | 15.7 | 25.4 | 5917 | -- | -- |
| 43.74 | 0.308 | 11.1 | -1.41 | 0.0649 | 0.636 | -- | 0.748 | -0.587 | 16.3 | 25.4 | 5935 | -- | -- |
| 43.94 | 0.309 | 11.1 | -1.63 | 0.0625 | 0.704 | -- | -- | -0.641 | 16.6 | 25.4 | 5920 | -- | -- |
| 43.94 | 0.309 | 11.1 | -1.43 | -- | 0.635 | -- | 0.716 | -0.592 | -- | 25.38 | 5980 | -- | -- |
| 62.44 | 0.37 | 11.1 | -1.37 | 0.0426 | -- | 0.455 | -- | -0.555 | 16 | -- | -- | -- | -- |
| 63.02 | 0.372 | 11.1 | -1.36 | 0.0503 | -- | -- | -- | -0.552 | 17.4 | -- | -- | -- | -- |
| 44.13 | 0.309 | 11.1 | -1.63 | -- | 0.698 | -- | -- | -0.646 | -- | 25.4 | 5964 | -- | -- |
| 105.85 | 0.482 | 11.1 | -- | 0.166 | 0.614 | -- | -- | -0.429 | 2.07 | 25.4 | 5920 | -- | -- |
| 63.15 | 0.371 | 11.1 | -1.36 | -- | -- | -- | -- | -0.554 | -- | -- | -- | -- | -- |
| 111.83 | 0.495 | 11.1 | -- | 0.0745 | -- | -- | -- | -0.401 | 16.7 | -- | -- | -- | -- |
| 106.13 | 0.48 | 11.1 | -- | -- | 0.342 | -- | -- | -0.394 | -- | 28.5 | 5945 | -- | -- |
| 112.12 | 0.494 | 11.1 | -- | -- | -- | -- | -- | -0.402 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.01 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 2 | 42.15 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 3 | 42.27 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 9 | 42.45 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 13 | 42.52 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 14 | 42.55 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 20 |
| 18 | 42.61 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 29 | 42.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 31 | 42.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 6 |
| 46 | 42.86 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 4 |
| 48 | 42.86 | temperature | 25 | 720 | > th | dose dependent | sin | 8 | NA |
| 53 | 42.88 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 59 | 42.91 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 65 | 42.93 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 9 |
| 67 | 42.93 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 11 |
| 68 | 42.93 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 13 |
| 70 | 42.94 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 73 | 42.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 82 | 42.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 9 |
| 93 | 42.94 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 15 |
| 94 | 42.94 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 17 |
| 96 | 42.95 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 108 | 42.95 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 13 |
| 197 | 43.09 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 199 | 43.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 17 |
| 220 | 43.10 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 265 | 43.14 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 10 |
| 277 | 43.14 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 282 | 43.15 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 283 | 43.15 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 304 | 43.15 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 18 |
| 313 | 43.16 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 16 |
| 361 | 43.19 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 19 |
| 395 | 43.21 | temperature | 25 | 4320 | > th | dose dependent | sin | 5 | NA |
| 527 | 43.28 | temperature | 30 | 4320 | < th | dose independent | sin | 8 | NA |
| 541 | 43.28 | temperature | 30 | 14400 | > th | dose dependent | rect. | 18 | 21 |
| 720 | 43.34 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 763 | 43.36 | temperature | 30 | 14400 | > th | dose independent | sin | 11 | NA |
| 768 | 43.36 | temperature | 25 | 14400 | > th | dose dependent | sin | 20 | NA |
| 802 | 43.37 | temperature | 30 | 4320 | > th | dose independent | sin | 8 | NA |
| 804 | 43.37 | temperature | 30 | 14400 | < th | dose independent | sin | 11 | NA |
| 877 | 43.39 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 895 | 43.40 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |