BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0131100 Os05g0131100|AK068008
         (270 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01995.1  | chr4:873075-874619 FORWARD LENGTH=259              218   3e-57
AT1G03055.1  | chr1:710102-711763 REVERSE LENGTH=265              111   5e-25
AT1G64680.1  | chr1:24036071-24037062 FORWARD LENGTH=251          109   2e-24

>AT4G01995.1 | chr4:873075-874619 FORWARD LENGTH=259
          Length = 258

 Score =  218 bits (554), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 114/201 (56%), Positives = 137/201 (68%), Gaps = 2/201 (0%)

Query: 54  EYEPSXXXXXXXXXXRAKMVEEVGWDSEKPGYNGLIEVANRLMIKGKSALETEQSAVXXX 113
           EY+P           R K+VEEVG DSEKPGY GLIE+   L++KG++  ET  +AV   
Sbjct: 51  EYKPGPLDDFFMQSFRNKLVEEVGSDSEKPGYVGLIELVKLLLLKGRTRSETSDAAVRIL 110

Query: 114 XXXXXXXXXXXXXXXXXPIANGQLASMMVARATALSCQWLMGPCLLNSITLSNGKSLSSG 173
                            PIA G+LA++MVAR T L+CQWLMGP  +N I L NG+S  SG
Sbjct: 111 KSLFPPLILELYKLLIAPIAQGKLAALMVARVTVLTCQWLMGPSKVNIIDLPNGESWDSG 170

Query: 174 VFVEKCKYLEESKCLGVCINTCKLPTQTFFKDHMGVDLYMEPNFEDYSCQFNFGVSPPPL 233
           VFVEKC+YLEESKC+GVCINTCKLPTQTFFKD+MGV L MEPNF+DYSCQF FGV+PP  
Sbjct: 171 VFVEKCQYLEESKCVGVCINTCKLPTQTFFKDYMGVPLVMEPNFKDYSCQFKFGVAPP-- 228

Query: 234 DTDKALKEPCLDICTNARRRK 254
           + D  + EPC + C+ A RRK
Sbjct: 229 EDDGNVNEPCFETCSIAGRRK 249



>AT1G03055.1 | chr1:710102-711763 REVERSE LENGTH=265
          Length = 264

 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 77/117 (65%), Gaps = 1/117 (0%)

Query: 135 GQLASMMVARATALSCQWLMGPCLLNSITLSNGKSLSSGVFVEKCKYLEESKCLGVCINT 194
            +++  + A  T +S  WL+GP  +   T  NG+   S V++EKC++LE+S C+G+C + 
Sbjct: 143 SKVSRELFALFTTISFAWLVGPSEVRE-TEVNGRKEKSVVYIEKCRFLEQSNCVGMCTHI 201

Query: 195 CKLPTQTFFKDHMGVDLYMEPNFEDYSCQFNFGVSPPPLDTDKALKEPCLDICTNAR 251
           CK+P+Q F K+ +G+ +YMEP+F D SC+  FG  PP ++ D A+K+PC + C + +
Sbjct: 202 CKIPSQIFIKNSLGMPIYMEPDFNDLSCKMMFGREPPEIEDDPAMKQPCFEFCKSNK 258



>AT1G64680.1 | chr1:24036071-24037062 FORWARD LENGTH=251
          Length = 250

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 91/165 (55%), Gaps = 6/165 (3%)

Query: 85  YNGLIEVANRLMIKGKSALETEQSAVXXXXXXXXXXXXXXXXXXXXPIANGQLASMMVAR 144
           Y   +EV+ R+M +G+S ++ +Q AV                    P    + A+   A 
Sbjct: 77  YESFVEVSKRVM-QGRSRVQ-QQEAVREVLLSMLPPGAPEQFRKLFPPT--KWAAEFNAA 132

Query: 145 ATALSCQWLMGPCLLNSITLSNGKSLSSGVFVEKCKYLEESKCLGVCINTCKLPTQTFFK 204
            T     WL+GP  +  + + NG    SGV ++KC+YLE S C+G+C+N CK+PTQ FF 
Sbjct: 133 LTVPFFHWLVGPSQVIEVEV-NGVKQRSGVRIKKCRYLENSGCVGMCVNMCKIPTQDFFT 191

Query: 205 DHMGVDLYMEPNFEDYSCQFNFGVSPPPLDTDKALKEPCL-DICT 248
           +  G+ L M PN+ED SC+  +G +PP  + D A K+PCL DIC+
Sbjct: 192 NEFGLPLTMNPNYEDMSCEMIYGQAPPAFEEDVATKQPCLADICS 236



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,260,411
Number of extensions: 194022
Number of successful extensions: 346
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 3
Length of query: 270
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 173
Effective length of database: 8,447,217
Effective search space: 1461368541
Effective search space used: 1461368541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)