BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0131100 Os05g0131100|AK068008
(270 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0131100 Conserved hypothetical protein 436 e-123
Os05g0131300 Conserved hypothetical protein 139 2e-33
Os08g0114100 Conserved hypothetical protein 105 3e-23
Os11g0587000 101 7e-22
Os05g0131401 70 2e-12
>Os05g0131100 Conserved hypothetical protein
Length = 270
Score = 436 bits (1121), Expect = e-123, Method: Compositional matrix adjust.
Identities = 229/270 (84%), Positives = 229/270 (84%)
Query: 1 MAMAPPSPPCLLRALLPVASSSSRGLRRRPTTSLLRCXXXXXXXXXXXGEGGREYEPSXX 60
MAMAPPSPPCLLRALLPVASSSSRGLRRRPTTSLLRC GEGGREYEPS
Sbjct: 1 MAMAPPSPPCLLRALLPVASSSSRGLRRRPTTSLLRCSSPSADAASPSGEGGREYEPSFA 60
Query: 61 XXXXXXXXRAKMVEEVGWDSEKPGYNGLIEVANRLMIKGKSALETEQSAVXXXXXXXXXX 120
RAKMVEEVGWDSEKPGYNGLIEVANRLMIKGKSALETEQSAV
Sbjct: 61 DDFLLAFFRAKMVEEVGWDSEKPGYNGLIEVANRLMIKGKSALETEQSAVRVLRSLFPPL 120
Query: 121 XXXXXXXXXXPIANGQLASMMVARATALSCQWLMGPCLLNSITLSNGKSLSSGVFVEKCK 180
PIANGQLASMMVARATALSCQWLMGPCLLNSITLSNGKSLSSGVFVEKCK
Sbjct: 121 LLVLFKALLAPIANGQLASMMVARATALSCQWLMGPCLLNSITLSNGKSLSSGVFVEKCK 180
Query: 181 YLEESKCLGVCINTCKLPTQTFFKDHMGVDLYMEPNFEDYSCQFNFGVSPPPLDTDKALK 240
YLEESKCLGVCINTCKLPTQTFFKDHMGVDLYMEPNFEDYSCQFNFGVSPPPLDTDKALK
Sbjct: 181 YLEESKCLGVCINTCKLPTQTFFKDHMGVDLYMEPNFEDYSCQFNFGVSPPPLDTDKALK 240
Query: 241 EPCLDICTNARRRKELGTGSSTDGLQCPQV 270
EPCLDICTNARRRKELGTGSSTDGLQCPQV
Sbjct: 241 EPCLDICTNARRRKELGTGSSTDGLQCPQV 270
>Os05g0131300 Conserved hypothetical protein
Length = 131
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/72 (87%), Positives = 66/72 (91%)
Query: 199 TQTFFKDHMGVDLYMEPNFEDYSCQFNFGVSPPPLDTDKALKEPCLDICTNARRRKELGT 258
+ TFFKDH+GVDLYMEPNFEDYSCQFNFGV PPPLDTDKALKEPCLDICTNA R + LGT
Sbjct: 60 SATFFKDHIGVDLYMEPNFEDYSCQFNFGVPPPPLDTDKALKEPCLDICTNAGRWRVLGT 119
Query: 259 GSSTDGLQCPQV 270
GSSTD LQCPQV
Sbjct: 120 GSSTDSLQCPQV 131
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/36 (86%), Positives = 32/36 (88%)
Query: 75 EVGWDSEKPGYNGLIEVANRLMIKGKSALETEQSAV 110
EVGWDSEKPGY GLIEVANR M+KGKSALE EQSA
Sbjct: 27 EVGWDSEKPGYTGLIEVANRPMVKGKSALEIEQSAT 62
>Os08g0114100 Conserved hypothetical protein
Length = 261
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 86/172 (50%), Gaps = 11/172 (6%)
Query: 78 WDSEKPGYNGLIEVANRLMIKGKSALETEQSAVXXXXXXXXXXXXXXXXXXXXPIANGQL 137
WD Y ++V+ R+M+ A +Q AV P +
Sbjct: 86 WD-----YESFVDVSRRVMVGRTRA--QQQEAVREVLLSMLPPGAPEQFKKLFPPT--RW 136
Query: 138 ASMMVARATALSCQWLMGPCLLNSITLSNGKSLSSGVFVEKCKYLEESKCLGVCINTCKL 197
A A T WL+GP + NG SGV ++KC+YLE S C+G+C+N CK+
Sbjct: 137 ACEFNAALTVPFFHWLVGPSEVVE-VEVNGVKQKSGVLIKKCRYLENSGCVGMCVNMCKI 195
Query: 198 PTQTFFKDHMGVDLYMEPNFEDYSCQFNFGVSPPPLDTDKALKEPCL-DICT 248
PTQ FF + G+ L M PNFED SC+ +G PPPL+ D A K+PC ++C+
Sbjct: 196 PTQNFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPLEEDPASKQPCYANLCS 247
>Os11g0587000
Length = 236
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 7/171 (4%)
Query: 74 EEVGWDSEKPGYNGLIEVANRLMIKGKSALETEQSAVXXXXXXXXXXXXXXXXXXXXPIA 133
E G +EK GY LI+ A L I +L+ + V P
Sbjct: 57 EASGLKNEKDGYESLIDAA--LAISRIFSLDKQSEIVTQALERALPSYILTMIKVMMP-- 112
Query: 134 NGQLASMMVARATALSCQWLMGPCLLNSITLSNGKSLSSGVFVEKCKYLEESKCLGVCIN 193
+ + A T + WL+GPC + + G+ + V++ KC++LE + C+G+C N
Sbjct: 113 PSRFSREYFAAFTTIFFPWLVGPCEVMESEV-EGRKEKNVVYIPKCRFLESTNCVGMCTN 171
Query: 194 TCKLPTQTFFKDHMGVDLYMEPNFEDYSCQFNFGVSPPPLDTDKALKEPCL 244
CK+P Q F +D +G+ +YM PNFED SC+ FG PP + D ALK+PC
Sbjct: 172 LCKIPCQKFIQDSLGMKVYMSPNFEDMSCEMIFGQQPP--EDDPALKQPCF 220
>Os05g0131401
Length = 159
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 3 MAPPSPPCLLRALLPVASSSSRGLRRR--PTTSLLRCXXXXXXXXXXXGEGGREYEPSXX 60
MA PSPPCLLR LLPVASSSSRGLRRR PTTSLLRC GEGGREYEPS
Sbjct: 1 MAAPSPPCLLRVLLPVASSSSRGLRRRRRPTTSLLRCSSPSADTASSSGEGGREYEPSFA 60
Query: 61 XXXXXXXXRAKMVEEVGWDSEKPGYNG 87
RAKMVEE + P G
Sbjct: 61 DDFLHAFFRAKMVEEKKKKTTPPHARG 87
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,514,386
Number of extensions: 314983
Number of successful extensions: 793
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 788
Number of HSP's successfully gapped: 6
Length of query: 270
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 171
Effective length of database: 11,866,615
Effective search space: 2029191165
Effective search space used: 2029191165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)