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Os08g0114100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.8 (0.0282) R2 : 0.888
β1 : -0.834 (0.104) R2dD : 0.0148 R2D : 0.0158
β2 : 2.81 (0.0878) R2dC : 0.409 R2C : 0.71
β3 : -1.89 (0.0986) R2dE : 0.148 R2E : 0.465
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.308 (0.061) R2dN8 : 0.00771 R2N8 : 0.00675
σ : 0.527
deviance : 128.1
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C
peak time of C : 9.71
E
wheather : temperature
threshold : 23.66
memory length : 251
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14.8
open length of G : 6.46

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
123.1 0.521 13.8 -0.852 2.87 -1.78 1.19 -0.186 -0.299 9.57 23.7 225 15.3 6.47
122.78 0.516 13.8 -0.859 2.87 -1.79 1.28 -- -0.307 9.59 23.8 231 15.2 6.38
127.34 0.526 13.8 -0.845 2.85 -1.76 -- -0.844 -0.315 9.61 23.7 229 15.2 6.45
128.1 0.527 13.8 -0.834 2.81 -1.89 -- -- -0.308 9.71 23.66 251 14.8 6.46
232.33 0.71 13.9 0.0836 -- -3.37 -- -0.709 -0.276 -- 18.8 230 15.1 8.27
196.46 0.657 13.8 -1.02 3.98 -- 1.67 -- -0.497 9.05 -- -- -- --
206.12 0.672 13.8 -0.961 3.97 -- -- -- -0.496 9.05 -- -- -- --
168.35 0.604 13.9 -0.414 -- -3.89 -- -- -0.377 -- 19.5 413 12.8 9.85
143.97 0.559 13.8 -- 2.76 -1.97 -- -- -0.191 9.77 23.8 256 14.8 6.47
1113 1.56 13.9 -0.969 -- -- -- -- -0.472 -- -- -- -- --
230.48 0.71 13.8 -- 3.97 -- -- -- -0.389 9.07 -- -- -- --
172.56 0.612 13.8 -- -- -3.77 -- -- -0.233 -- 19.58 400 12.8 10.1
1137.76 1.57 13.9 -- -- -- -- -- -0.365 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 132.74 temperature 20 270 > th dose dependent rect. 15 8
2 133.19 temperature 25 270 > th dose independent rect. 15 6
23 137.76 temperature 25 10 > th dose independent rect. 16 7
26 138.14 temperature 20 10 > th dose dependent rect. 16 8
35 139.35 temperature 20 10 > th dose dependent rect. 16 10
36 139.38 temperature 30 270 < th dose dependent rect. 12 14
59 141.82 temperature 25 10 < th dose dependent sin 16 NA
66 142.53 temperature 25 10 < th dose dependent rect. 13 13
74 142.91 temperature 15 30 > th dose dependent sin 14 NA
88 143.37 temperature 25 270 < th dose dependent rect. 12 11
352 149.44 temperature 20 30 > th dose independent rect. 16 10
368 149.68 temperature 30 720 < th dose dependent rect. 12 1
449 151.24 temperature 30 720 < th dose dependent rect. 11 4
464 151.52 temperature 20 30 > th dose independent rect. 16 18
501 152.16 temperature 15 270 > th dose dependent rect. 15 17
671 154.64 temperature 20 30 > th dose independent sin 14 NA
698 154.99 temperature 15 270 > th dose dependent rect. 14 20
703 155.04 temperature 20 10 > th dose independent rect. 18 16
721 155.24 temperature 20 10 > th dose independent rect. 16 14
725 155.25 temperature 15 30 > th dose dependent rect. 16 18
758 155.54 temperature 20 90 < th dose independent rect. 13 14
762 155.58 temperature 20 10 > th dose independent rect. 16 20
790 155.95 temperature 25 720 > th dose independent rect. 9 10
817 156.30 temperature 20 10 < th dose independent sin 15 NA
833 156.52 temperature 20 90 < th dose independent sin 16 NA
854 156.79 temperature 20 10 < th dose independent rect. 14 12
957 157.63 temperature 25 270 < th dose independent rect. 11 12