BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0110700 Os08g0110700|AK066813
(937 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0110700 DDHD domain containing protein 1890 0.0
Os04g0264900 128 2e-29
Os07g0406600 Hypothetical protein 74 5e-13
>Os08g0110700 DDHD domain containing protein
Length = 937
Score = 1890 bits (4896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 910/937 (97%), Positives = 910/937 (97%)
Query: 1 MESPAARGALGDDASGASTSQAAPGAVDGGASPDSLRNTPSNIARLEDAIEHCAARRKYL 60
MESPAARGALGDDASGASTSQAAPGAVDGGASPDSLRNTPSNIARLEDAIEHCAARRKYL
Sbjct: 1 MESPAARGALGDDASGASTSQAAPGAVDGGASPDSLRNTPSNIARLEDAIEHCAARRKYL 60
Query: 61 ARTKSPSDGEDVRWYFCKLPLADKALSASVPRTEIVGKGDYFRFSMRDSLALEASFLERE 120
ARTKSPSDGEDVRWYFCKLPLADKALSASVPRTEIVGKGDYFRFSMRDSLALEASFLERE
Sbjct: 61 ARTKSPSDGEDVRWYFCKLPLADKALSASVPRTEIVGKGDYFRFSMRDSLALEASFLERE 120
Query: 121 EALLAYWWREYAECSEGPKGSLVAADASDSKSLYKVEEERVGVPVKGGLYEVDLMRRHCF 180
EALLAYWWREYAECSEGPKGSLVAADASDSKSLYKVEEERVGVPVKGGLYEVDLMRRHCF
Sbjct: 121 EALLAYWWREYAECSEGPKGSLVAADASDSKSLYKVEEERVGVPVKGGLYEVDLMRRHCF 180
Query: 181 PVYWNGENRRVLRGHWFARKGGLDWIPLREDVSEQLELAYNCQVWHRRKFQPSGLFAARV 240
PVYWNGENRRVLRGHWFARKGGLDWIPLREDVSEQLELAYNCQVWHRRKFQPSGLFAARV
Sbjct: 181 PVYWNGENRRVLRGHWFARKGGLDWIPLREDVSEQLELAYNCQVWHRRKFQPSGLFAARV 240
Query: 241 DLQGSTPDLHALFTGEDDTWEAWLVFDTGPKLGGNTIKLRRGFSSSGSAKPTQDELRQQK 300
DLQGSTPDLHALFTGEDDTWEAWLVFDTGPKLGGNTIKLRRGFSSSGSAKPTQDELRQQK
Sbjct: 241 DLQGSTPDLHALFTGEDDTWEAWLVFDTGPKLGGNTIKLRRGFSSSGSAKPTQDELRQQK 300
Query: 301 EEEMDDYCSQVPVGHLVFMVHGIGQRLEKANLVDDVVDFRRVTANLAERYLTPYQRSTQR 360
EEEMDDYCSQVPVGHLVFMVHGIGQRLEKANLVDDVVDFRRVTANLAERYLTPYQRSTQR
Sbjct: 301 EEEMDDYCSQVPVGHLVFMVHGIGQRLEKANLVDDVVDFRRVTANLAERYLTPYQRSTQR 360
Query: 361 VLFIPCQWRKSLKLSGEQSVEKITLDGVKGLRVALGATVHDVLYYMSPIYCQHIIDSVSN 420
VLFIPCQWRKSLKLSGEQSVEKITLDGVKGLRVALGATVHDVLYYMSPIYCQHIIDSVSN
Sbjct: 361 VLFIPCQWRKSLKLSGEQSVEKITLDGVKGLRVALGATVHDVLYYMSPIYCQHIIDSVSN 420
Query: 421 QLNQLYTKFIKRNPGYSGKVSIYGHSLGSVLSYDILCHQESSSAPFPVDYMNMEVSSDEG 480
QLNQLYTKFIKRNPGYSGKVSIYGHSLGSVLSYDILCHQESSSAPFPVDYMNMEVSSDEG
Sbjct: 421 QLNQLYTKFIKRNPGYSGKVSIYGHSLGSVLSYDILCHQESSSAPFPVDYMNMEVSSDEG 480
Query: 481 HIAKSPDTVTAHESVMKEQDTSSISGHSCADNVNDVVDEGSTRTGTSCTEDTTLPTCALE 540
HIAKSPDTVTAHESVMKEQDTSSISGHSCADNVNDVVDEGSTRTGTSCTEDTTLPTCALE
Sbjct: 481 HIAKSPDTVTAHESVMKEQDTSSISGHSCADNVNDVVDEGSTRTGTSCTEDTTLPTCALE 540
Query: 541 NSPKLTTDALPTAVDGEQIEVEKQVDNHKIACSEEGDNSSVRAKDIDSCIISRSAEGVHA 600
NSPKLTTDALPTAVDGEQIEVEKQVDNHKIACSEEGDNSSVRAKDIDSCIISRSAEGVHA
Sbjct: 541 NSPKLTTDALPTAVDGEQIEVEKQVDNHKIACSEEGDNSSVRAKDIDSCIISRSAEGVHA 600
Query: 601 DVPDKDTLISSLKEEVERLKARLAQLEQHNDLVTESSAESHQGKSATHAVNLSSGKNRIG 660
DVPDKDTLISSLKEEVERLKARLAQLEQHNDLVTESSAESHQGKSATHAVNLSSGKNRIG
Sbjct: 601 DVPDKDTLISSLKEEVERLKARLAQLEQHNDLVTESSAESHQGKSATHAVNLSSGKNRIG 660
Query: 661 QGSTSESYTPHIRYTKLNFKVDTFYAVGSPLGVFLSLRNVRIGIGRGQDYWQNENIVEEM 720
QGSTSESYTPHIRYTKLNFKVDTFYAVGSPLGVFLSLRNVRIGIGRGQDYWQNENIVEEM
Sbjct: 661 QGSTSESYTPHIRYTKLNFKVDTFYAVGSPLGVFLSLRNVRIGIGRGQDYWQNENIVEEM 720
Query: 721 PCCRQMFNIFHPFDPVAYRIEPLVCEDYISKRPVIVPYHRGGKRIHVGVQEFTEDIAARS 780
PCCRQMFNIFHPFDPVAYRIEPLVCEDYISKRPVIVPYHRGGKRIHVGVQEFTEDIAARS
Sbjct: 721 PCCRQMFNIFHPFDPVAYRIEPLVCEDYISKRPVIVPYHRGGKRIHVGVQEFTEDIAARS 780
Query: 781 QAVARQFXXXXXXXXXXXXXXXRNDTDEDVDSNNEKEKSYGYMMMERLTGSPDGRIDHVL 840
QAVARQF RNDTDEDVDSNNEKEKSYGYMMMERLTGSPDGRIDHVL
Sbjct: 781 QAVARQFKSLKVKAVAALLSLSRNDTDEDVDSNNEKEKSYGYMMMERLTGSPDGRIDHVL 840
Query: 841 QEKTFQHPYLSALGSHTNYWRDHDTALFILKHLYRXXXXXXXXXXXXRMPIRLFYVRDPI 900
QEKTFQHPYLSALGSHTNYWRDHDTALFILKHLYR RMPIRLFYVRDPI
Sbjct: 841 QEKTFQHPYLSALGSHTNYWRDHDTALFILKHLYRDIPEEPPTDDPERMPIRLFYVRDPI 900
Query: 901 AEETPLTFSDNSLVKEFSRKVRTYSRKSENDSSCESS 937
AEETPLTFSDNSLVKEFSRKVRTYSRKSENDSSCESS
Sbjct: 901 AEETPLTFSDNSLVKEFSRKVRTYSRKSENDSSCESS 937
>Os04g0264900
Length = 180
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 55/56 (98%), Positives = 56/56 (100%)
Query: 169 LYEVDLMRRHCFPVYWNGENRRVLRGHWFARKGGLDWIPLREDVSEQLELAYNCQV 224
LYEVDLMRRHCFPVYWNG+NRRVLRGHWFARKGGLDWIPLREDVSEQLELAYNCQV
Sbjct: 33 LYEVDLMRRHCFPVYWNGKNRRVLRGHWFARKGGLDWIPLREDVSEQLELAYNCQV 88
>Os07g0406600 Hypothetical protein
Length = 84
Score = 73.9 bits (180), Expect = 5e-13, Method: Composition-based stats.
Identities = 34/51 (66%), Positives = 35/51 (68%)
Query: 855 SHTNYWRDHDTALFILKHLYRXXXXXXXXXXXXRMPIRLFYVRDPIAEETP 905
S +NYWRDHDTALFILKHLY RMPIRLFYVRDPIAE P
Sbjct: 34 SCSNYWRDHDTALFILKHLYHDIPEETPTDDPERMPIRLFYVRDPIAERFP 84
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 32,482,613
Number of extensions: 1435093
Number of successful extensions: 4221
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4221
Number of HSP's successfully gapped: 3
Length of query: 937
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 827
Effective length of database: 11,292,261
Effective search space: 9338699847
Effective search space used: 9338699847
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)