Os07g0406600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os07g0406600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.94 | 0.361 | 11.3 | -1.46 | 0.723 | 0.488 | -0.673 | -0.433 | -0.13 | 20.3 | 22.5 | 8594 | -- | -- |
| 59.22 | 0.358 | 11.3 | -1.33 | 0.74 | 0.519 | -0.699 | -- | -0.1 | 20.3 | 22.4 | 8574 | -- | -- |
| 60.23 | 0.361 | 11.3 | -1.45 | 0.72 | 0.473 | -- | -0.564 | -0.14 | 20.4 | 23.1 | 8265 | -- | -- |
| 60.61 | 0.363 | 11.2 | -1.3 | 0.725 | 0.505 | -- | -- | -0.0914 | 20.4 | 22.47 | 8574 | -- | -- |
| 89.03 | 0.439 | 11.3 | -1.44 | -- | 0.503 | -- | -0.458 | -0.146 | -- | 22.77 | 8090 | -- | -- |
| 66.6 | 0.383 | 11.2 | -0.992 | 0.726 | -- | -0.646 | -- | 0.121 | 20.4 | -- | -- | -- | -- |
| 67.91 | 0.386 | 11.2 | -0.973 | 0.726 | -- | -- | -- | 0.121 | 20.5 | -- | -- | -- | -- |
| 89.24 | 0.44 | 11.2 | -1.38 | -- | 0.569 | -- | -- | -0.0993 | -- | 21.4 | 9434 | -- | -- |
| 81.05 | 0.419 | 11.1 | -- | 0.755 | -0.517 | -- | -- | 0.412 | 20.6 | 22.09 | 47520 | -- | -- |
| 97.41 | 0.461 | 11.2 | -0.976 | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
| 92.87 | 0.451 | 11.2 | -- | 0.73 | -- | -- | -- | 0.229 | 20.4 | -- | -- | -- | -- |
| 110.9 | 0.49 | 11.1 | -- | -- | -0.5 | -- | -- | 0.397 | -- | 22.07 | 47520 | -- | -- |
| 122.54 | 0.517 | 11.2 | -- | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.34 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 2 | 57.40 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 6 | 57.67 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 8 | 57.94 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 10 | 58.10 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 11 | 58.15 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 12 | 58.16 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 16 | 58.17 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 22 | 58.28 | humidity | 80.0 | 720 | > th | dose independent | rect. | 21 | 1 |
| 23 | 58.33 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 29 | 58.48 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 30 | 58.55 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 21 |
| 53 | 58.67 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 56 | 58.70 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 3 |
| 59 | 58.72 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 61 | 58.73 | wind | 3.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 68 | 58.78 | wind | 3.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 72 | 58.82 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 75 | 58.84 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 88 | 58.87 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 20 |
| 91 | 58.88 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 92 | 58.88 | temperature | 25.0 | 720 | > th | dose independent | rect. | 7 | 16 |
| 117 | 58.95 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 122 | 58.96 | temperature | 25.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 126 | 58.97 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 132 | 58.98 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 142 | 59.01 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 148 | 59.02 | temperature | 25.0 | 720 | > th | dose independent | rect. | 7 | 14 |
| 161 | 59.05 | wind | 1.0 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 170 | 59.07 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 188 | 59.11 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 202 | 59.13 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 203 | 59.13 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 224 | 59.15 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 242 | 59.17 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 289 | 59.24 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 290 | 59.24 | wind | 1.0 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 400 | 59.31 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 11 | 18 |
| 407 | 59.32 | temperature | 25.0 | 720 | < th | dose independent | rect. | 7 | 17 |
| 458 | 59.36 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 477 | 59.36 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 21 |
| 496 | 59.38 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 536 | 59.41 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 540 | 59.42 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 570 | 59.43 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 3 | NA |
| 571 | 59.43 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 589 | 59.44 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 17 | NA |
| 621 | 59.46 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 623 | 59.46 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 625 | 59.46 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 643 | 59.47 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 646 | 59.47 | temperature | 25.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 689 | 59.49 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 8 |
| 734 | 59.51 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 741 | 59.52 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 749 | 59.52 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 776 | 59.53 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 784 | 59.54 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 807 | 59.55 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 815 | 59.55 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 864 | 59.57 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 885 | 59.58 | temperature | 25.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 905 | 59.58 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 7 | 16 |
| 918 | 59.59 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 967 | 59.61 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 992 | 59.61 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 994 | 59.62 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 7 | 5 |