BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0406600 Os07g0406600|J013002I21
         (84 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0406600  Hypothetical protein                                178   7e-46
Os08g0110700  DDHD domain containing protein                      103   3e-23

>Os07g0406600 Hypothetical protein
          Length = 84

 Score =  178 bits (452), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 84/84 (100%), Positives = 84/84 (100%)

Query: 1  FGLTCHAGINYFTEDIAARSQAVARQFKSLKVYSCSNYWRDHDTALFILKHLYHDIPEET 60
          FGLTCHAGINYFTEDIAARSQAVARQFKSLKVYSCSNYWRDHDTALFILKHLYHDIPEET
Sbjct: 1  FGLTCHAGINYFTEDIAARSQAVARQFKSLKVYSCSNYWRDHDTALFILKHLYHDIPEET 60

Query: 61 PTDDPERMPIRLFYVRDPIAERFP 84
          PTDDPERMPIRLFYVRDPIAERFP
Sbjct: 61 PTDDPERMPIRLFYVRDPIAERFP 84



>Os08g0110700 DDHD domain containing protein
          Length = 937

 Score =  103 bits (257), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/51 (88%), Positives = 46/51 (90%)

Query: 34  SCSNYWRDHDTALFILKHLYHDIPEETPTDDPERMPIRLFYVRDPIAERFP 84
           S +NYWRDHDTALFILKHLY DIPEE PTDDPERMPIRLFYVRDPIAE  P
Sbjct: 855 SHTNYWRDHDTALFILKHLYRDIPEEPPTDDPERMPIRLFYVRDPIAEETP 905



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.141    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,018,047
Number of extensions: 107781
Number of successful extensions: 280
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 2
Length of query: 84
Length of database: 17,035,801
Length adjustment: 54
Effective length of query: 30
Effective length of database: 14,216,245
Effective search space: 426487350
Effective search space used: 426487350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)