FiT-DB / Search/ Help/ Sample detail

Os08g0110700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DDHD domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.43 (0.02) R2 : 0.342
β1 : -1.07 (0.0734) R2dD : 0.318 R2D : 0.228
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.329 (0.0428) R2dN8 : 0.114 R2N8 : 0.0245
σ : 0.376
deviance : 64.75
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.59 0.299 9.44 -1.15 0.493 -0.401 -0.45 1.06 -0.441 9.69 19.98 1485 -- --
43.42 0.307 9.43 -1.12 0.501 -0.418 -0.438 -- -0.437 9.86 19.97 1483 -- --
41.21 0.299 9.44 -1.16 0.489 -0.415 -- 1.13 -0.443 9.47 19.98 1511 -- --
43.57 0.307 9.42 -1.12 0.524 -0.415 -- -- -0.411 9.51 29.95 1509 -- --
53.32 0.342 9.42 -1.03 -- -0.35 -- 0.602 -0.316 -- 19.9 1624 -- --
48.77 0.327 9.41 -1.04 0.499 -- -0.518 -- -0.328 9.77 -- -- -- --
49.76 0.33 9.41 -1.07 0.504 -- -- -- -0.33 9.58 -- -- -- --
55.26 0.348 9.42 -1.07 -- -0.346 -- -- -0.321 -- 19.9 1624 -- --
54.19 0.343 9.37 -- 0.759 -0.907 -- -- -0.204 9.11 79.99 16292 -- --
64.75 0.376 9.43 -1.07 -- -- -- -- -0.329 -- -- -- -- --
79.69 0.418 9.39 -- 0.506 -- -- -- -0.211 9.74 -- -- -- --
62.26 0.367 9.37 -- -- -0.956 -- -- -0.0997 -- 78.35 20307 -- --
94.92 0.455 9.4 -- -- -- -- -- -0.21 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.99 radiation 10.0 1440 < th dose independent rect. 15 16
3 39.18 radiation 10.0 1440 < th dose independent rect. 16 1
4 39.20 radiation 30.0 1440 < th dose independent rect. 10 1
7 39.47 radiation 10.0 1440 < th dose independent rect. 16 9
9 39.49 radiation 10.0 1440 < th dose independent rect. 16 4
19 39.58 precipitation 0.1 43200 > th dose dependent rect. 17 2
34 39.96 radiation 20.0 1440 < th dose independent rect. 15 20
37 40.01 radiation 10.0 1440 < th dose independent sin 13 NA
38 40.03 wind 7.0 43200 > th dose dependent rect. 11 3
40 40.10 wind 9.0 43200 < th dose independent rect. 10 5
41 40.10 radiation 10.0 43200 < th dose dependent rect. 7 2
48 40.21 radiation 10.0 43200 > th dose independent rect. 7 1
56 40.30 wind 9.0 43200 > th dose independent rect. 11 1
57 40.31 wind 9.0 43200 > th dose independent rect. 14 1
62 40.34 wind 9.0 43200 > th dose independent rect. 10 5
64 40.35 precipitation 0.1 43200 > th dose dependent rect. 16 5
68 40.41 precipitation 0.1 43200 < th dose independent rect. 16 2
70 40.41 precipitation 0.1 43200 < th dose dependent rect. 16 2
72 40.42 precipitation 0.1 43200 > th dose independent rect. 16 2
84 40.54 radiation 30.0 1440 < th dose independent rect. 6 7
88 40.54 radiation 30.0 1440 < th dose independent rect. 23 14
104 40.58 radiation 10.0 43200 < th dose independent rect. 9 1
107 40.58 humidity 50.0 90 > th dose dependent rect. 21 23
108 40.59 wind 1.0 14400 < th dose independent rect. 5 1
109 40.60 wind 9.0 43200 < th dose independent rect. 11 2
114 40.64 radiation 10.0 1440 < th dose dependent sin 13 NA
116 40.67 wind 9.0 43200 < th dose independent rect. 14 1
122 40.72 radiation 10.0 1440 < th dose dependent rect. 15 17
123 40.72 radiation 30.0 1440 < th dose dependent rect. 15 21
125 40.73 radiation 20.0 1440 < th dose independent rect. 5 16
126 40.73 radiation 20.0 1440 < th dose independent rect. 3 18
127 40.73 radiation 20.0 1440 < th dose independent rect. 23 18
128 40.73 radiation 20.0 1440 < th dose independent rect. 6 19
131 40.73 radiation 20.0 1440 < th dose independent rect. 23 21
135 40.74 radiation 20.0 1440 < th dose independent no NA NA
138 40.74 radiation 20.0 1440 < th dose independent rect. 6 11
233 40.75 radiation 20.0 1440 < th dose independent rect. 9 23
239 40.76 humidity 50.0 14400 < th dose independent rect. 16 20
255 40.79 wind 9.0 43200 > th dose dependent rect. 14 2
262 40.80 humidity 60.0 14400 < th dose dependent rect. 17 17
263 40.81 radiation 30.0 1440 < th dose independent sin 3 NA
268 40.81 radiation 1.0 1440 > th dose dependent rect. 16 15
283 40.88 wind 9.0 43200 > th dose dependent rect. 15 4
286 40.89 radiation 10.0 1440 < th dose dependent rect. 15 22
287 40.89 humidity 50.0 30 > th dose dependent rect. 11 23
425 40.94 radiation 20.0 43200 < th dose independent rect. 11 1
428 40.94 humidity 50.0 14400 > th dose independent rect. 16 20
439 40.96 radiation 10.0 43200 > th dose independent rect. 17 16
486 41.04 humidity 90.0 90 < th dose dependent rect. 15 23
491 41.05 radiation 1.0 1440 > th dose dependent rect. 15 22
523 41.08 radiation 1.0 1440 > th dose dependent rect. 15 17
647 41.15 humidity 90.0 30 < th dose dependent rect. 24 22
653 41.16 radiation 40.0 1440 < th dose dependent rect. 16 15
662 41.17 precipitation 0.1 43200 > th dose dependent rect. 17 7
682 41.18 radiation 40.0 1440 < th dose dependent rect. 10 2
687 41.19 radiation 20.0 1440 > th dose dependent rect. 10 3
703 41.20 humidity 50.0 14400 < th dose independent rect. 17 18
704 41.20 radiation 1.0 1440 > th dose dependent sin 12 NA
732 41.22 humidity 90.0 30 < th dose dependent rect. 7 15
740 41.23 humidity 50.0 90 > th dose dependent no NA NA
741 41.23 radiation 30.0 43200 < th dose dependent rect. 11 1
744 41.23 radiation 1.0 1440 > th dose dependent rect. 10 23
751 41.24 humidity 60.0 43200 < th dose dependent rect. 20 13
781 41.26 precipitation 0.1 43200 > th dose dependent rect. 20 1
813 41.27 radiation 10.0 1440 < th dose dependent rect. 4 21
814 41.27 radiation 10.0 1440 < th dose dependent rect. 23 21
827 41.28 radiation 10.0 1440 < th dose dependent no NA NA
829 41.28 radiation 10.0 1440 < th dose dependent rect. 4 15
841 41.28 radiation 10.0 1440 < th dose dependent rect. 24 19
945 41.35 wind 9.0 43200 > th dose independent rect. 11 11
957 41.35 humidity 90.0 30 < th dose dependent rect. 6 23