BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0108100 Os08g0108100|AK070037
(227 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0108100 Pectinesterase inhibitor domain containing pro... 212 2e-55
Os12g0283400 Glutelin family protein 159 1e-39
AK111367 114 4e-26
>Os08g0108100 Pectinesterase inhibitor domain containing protein
Length = 227
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/157 (72%), Positives = 114/157 (72%)
Query: 61 LVRATCNSTAYYDVCVSALAADPSSTTADVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
LVRATCNSTAYYDVCVSALAADPSSTTADVR
Sbjct: 61 LVRATCNSTAYYDVCVSALAADPSSTTADVRGLSAIAVSVAAANASGAAQAAAALANGTA 120
Query: 121 XXXXXXXXXXXXXXLLRACAGKYGDARDALAAAKESMGQQDYDLATVHVSAGAEYPQVCK 180
LLRACAGKYGDARDALAAAKESMGQQDYDLATVHVSAGAEYPQVCK
Sbjct: 121 PLAAAAAGDGTVQALLRACAGKYGDARDALAAAKESMGQQDYDLATVHVSAGAEYPQVCK 180
Query: 181 ALFRRQRPGAYPAELAAREEALNKLCSVALDIIALLT 217
ALFRRQRPGAYPAELAAREEALNKLCSVALDIIALLT
Sbjct: 181 ALFRRQRPGAYPAELAAREEALNKLCSVALDIIALLT 217
>Os12g0283400 Glutelin family protein
Length = 228
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/163 (55%), Positives = 100/163 (61%), Gaps = 4/163 (2%)
Query: 61 LVRATCNSTAYYDVCVSALAADPSSTTADVRX----XXXXXXXXXXXXXXXXXXXXXXXX 116
LVRATCNST+YYD+CV+ L+ADPSS TADVR
Sbjct: 64 LVRATCNSTSYYDLCVAELSADPSSATADVRGLSSIAVSAAAANASGAAQAASALANATD 123
Query: 117 XXXXXXXXXXXXXXXXXXLLRACAGKYGDARDALAAAKESMGQQDYDLATVHVSAGAEYP 176
LL CA KYGDARDALAAAK S+ QQDYD+A+VHVSA AEYP
Sbjct: 124 AGTTAGVAGDGGGAVVQRLLATCAAKYGDARDALAAAKGSIAQQDYDMASVHVSAAAEYP 183
Query: 177 QVCKALFRRQRPGAYPAELAAREEALNKLCSVALDIIALLTSS 219
QVC+ LF RQ PG YP ELAA E AL +LCSVALDIIALL+SS
Sbjct: 184 QVCRTLFGRQSPGDYPPELAATEVALRQLCSVALDIIALLSSS 226
>AK111367
Length = 192
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 87/151 (57%), Gaps = 11/151 (7%)
Query: 61 LVRATCNSTAYYDVCVSALAADPS-STTADVRXXXXXXXXXXXXXXXXXXXXXXXXXXXX 119
LV++TCNST YYDVCV+ALAADPS ST ADVR
Sbjct: 38 LVQSTCNSTTYYDVCVAALAADPSISTAADVRGLCAIAVSAAATNASAAGASLLASAAAY 97
Query: 120 XXXXXXXXXXXXXXXLLRACAGKYGDARDALAAAKESMGQQDYDLATVHVSAGAEYPQVC 179
LLRACA +Y DAR AL +A+E++ ++ YD A VHVSA A+YP +C
Sbjct: 98 QSQPQAP--------LLRACAARYADARQALISAQEAIKEEAYDYAFVHVSAAAQYPTMC 149
Query: 180 KALFRR--QRPGAYPAELAAREEALNKLCSV 208
+ALFRR + AYP++LA REE L +LC+V
Sbjct: 150 RALFRRASSQQRAYPSDLAKREEGLRRLCTV 180
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.126 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,980,995
Number of extensions: 111360
Number of successful extensions: 367
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 4
Length of query: 227
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 130
Effective length of database: 11,971,043
Effective search space: 1556235590
Effective search space used: 1556235590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)