Os08g0108100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pectinesterase inhibitor domain containing protein.
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Os08g0108100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pectinesterase inhibitor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 274.84 | 0.779 | 10.6 | -0.774 | 1.7 | 1.26 | 1.69 | 1.24 | -0.641 | 4.13 | 50.92 | 40 | 2 | 18.3 |
| 280.29 | 0.78 | 10.6 | -0.8 | 1.74 | 1.27 | 1.69 | -- | -0.648 | 4.16 | 50.05 | 42 | 1.97 | 18.2 |
| 282.76 | 0.783 | 10.6 | -0.812 | 1.67 | 1.26 | -- | 1.24 | -0.652 | 4.18 | 52 | 40 | 1.94 | 18.4 |
| 286.14 | 0.788 | 10.6 | -0.802 | 1.8 | 1.32 | -- | -- | -0.617 | 3.97 | 48.51 | 42 | 2.63 | 17.7 |
| 356.11 | 0.879 | 10.5 | -0.622 | -- | 1.96 | -- | 2.03 | -0.521 | -- | 69.51 | 32 | 1.82 | 15.8 |
| 350.24 | 0.877 | 10.5 | -0.799 | 2.16 | -- | 2.16 | -- | -0.622 | 5.11 | -- | -- | -- | -- |
| 362.04 | 0.891 | 10.5 | -0.8 | 2.18 | -- | -- | -- | -0.632 | 5.12 | -- | -- | -- | -- |
| 366.94 | 0.892 | 10.5 | -0.627 | -- | 2.05 | -- | -- | -0.481 | -- | 71.04 | 46 | 1.63 | 15.8 |
| 303.8 | 0.812 | 10.5 | -- | 1.81 | 1.35 | -- | -- | -0.532 | 3.97 | 46.48 | 41 | 2.65 | 17.5 |
| 610.86 | 1.15 | 10.6 | -0.723 | -- | -- | -- | -- | -0.577 | -- | -- | -- | -- | -- |
| 378.92 | 0.911 | 10.5 | -- | 2.17 | -- | -- | -- | -0.543 | 5.14 | -- | -- | -- | -- |
| 381.79 | 0.91 | 10.5 | -- | -- | 2.04 | -- | -- | -0.429 | -- | 70.16 | 50 | 1.63 | 15.8 |
| 624.64 | 1.17 | 10.5 | -- | -- | -- | -- | -- | -0.496 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 275.30 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 18 |
| 12 | 280.89 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 2 | 20 |
| 26 | 283.50 | humidity | 80.0 | 10 | > th | dose independent | rect. | 3 | 17 |
| 99 | 290.29 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 2 | 13 |
| 110 | 290.92 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 19 |
| 118 | 291.40 | humidity | 80.0 | 10 | > th | dose independent | rect. | 2 | 20 |
| 143 | 293.48 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 178 | 294.99 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 7 |
| 186 | 295.23 | radiation | 1.0 | 90 | < th | dose independent | rect. | 3 | 17 |
| 197 | 295.43 | humidity | 60.0 | 30 | > th | dose independent | rect. | 2 | 18 |
| 215 | 295.85 | humidity | 80.0 | 270 | > th | dose independent | rect. | 24 | 20 |
| 228 | 296.24 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 229 | 296.26 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 236 | 296.35 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 2 | 2 |
| 245 | 296.59 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 256 | 296.87 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 259 | 296.95 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 22 |
| 260 | 296.95 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 267 | 297.15 | radiation | 1.0 | 270 | < th | dose independent | rect. | 24 | 20 |
| 289 | 297.52 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 2 | 12 |
| 296 | 297.63 | radiation | 1.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 349 | 298.43 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 357 | 298.56 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 23 |
| 359 | 298.56 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 361 | 298.58 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 24 | 20 |
| 363 | 298.65 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 403 | 299.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 20 |
| 404 | 299.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 425 | 299.38 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 2 | 21 |
| 458 | 299.84 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 20 | 4 |
| 465 | 299.97 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 573 | 301.35 | temperature | 15.0 | 30 | > th | dose independent | rect. | 20 | 7 |
| 580 | 301.45 | radiation | 20.0 | 90 | < th | dose independent | rect. | 2 | 12 |
| 593 | 301.65 | radiation | 1.0 | 90 | < th | dose independent | sin | 1 | NA |
| 629 | 302.05 | radiation | 1.0 | 90 | > th | dose independent | sin | 1 | NA |
| 632 | 302.07 | humidity | 80.0 | 10 | > th | dose independent | rect. | 2 | 12 |
| 654 | 302.24 | humidity | 50.0 | 30 | > th | dose dependent | sin | 4 | NA |
| 663 | 302.31 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 753 | 303.13 | wind | 7.0 | 30 | < th | dose independent | rect. | 20 | 7 |
| 773 | 303.38 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 16 | 23 |
| 783 | 303.43 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 17 |
| 809 | 303.63 | radiation | 10.0 | 90 | < th | dose independent | rect. | 2 | 21 |
| 817 | 303.68 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 7 |
| 818 | 303.68 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 7 |
| 821 | 303.68 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 7 |
| 822 | 303.68 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 7 |
| 827 | 303.68 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 17 |
| 829 | 303.68 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 3 | 17 |
| 831 | 303.68 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 20 | 7 |
| 837 | 303.69 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 860 | 303.87 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 863 | 303.87 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 867 | 303.87 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 873 | 303.87 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 874 | 303.87 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 894 | 303.87 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 18 |
| 900 | 303.89 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 17 |
| 901 | 303.89 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 17 |
| 904 | 303.90 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 2 | 7 |
| 909 | 303.92 | humidity | 80.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 917 | 303.95 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 21 | 6 |
| 980 | 304.27 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 7 |
| 989 | 304.31 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 7 |
| 990 | 304.31 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 7 |