BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0108100 Os08g0108100|AK070037
         (227 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64620.1  | chr5:25831875-25832417 FORWARD LENGTH=181           83   1e-16

>AT5G64620.1 | chr5:25831875-25832417 FORWARD LENGTH=181
          Length = 180

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 7/153 (4%)

Query: 61  LVRATCNSTAYYDVCVSALAADPSSTTADVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ++ +TC +T YY  CVSAL +DP S TAD +                             
Sbjct: 30  IIESTCKTTNYYKFCVSALKSDPRSPTADTKGLASIMVGVGMTNATSTANYIAGNLSATV 89

Query: 121 XXXXXXXXXXXXXXLLRACAGKYGDARDALAAAKESMGQQDYDLATVHVSAGAEYPQVCK 180
                         +L+ C+ KY  A D+L    + +  + YD A++HV A  +YP VC+
Sbjct: 90  KDTVLKK-------VLQDCSEKYALAADSLRLTIQDLDDEAYDYASMHVLAAQDYPNVCR 142

Query: 181 ALFRRQRPGAYPAELAAREEALNKLCSVALDII 213
            +FRR +  AYP E+  RE +L ++C V   I+
Sbjct: 143 NIFRRVKGLAYPVEIRRREASLRRICGVVSGIL 175



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.126    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,413,568
Number of extensions: 62120
Number of successful extensions: 193
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 132
Effective length of database: 8,502,049
Effective search space: 1122270468
Effective search space used: 1122270468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)