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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0283400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glutelin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.7 (0.062) R2 : 0.147
β1 : 0.452 (0.223) R2dD : 0.00873 R2D : 0.0251
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.195 (0.219) R2dE : 0.00193 R2E : -0.00585
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.15 (1.11) R2dD*E : 0.122 R2D*E : 0.135
γ1 : -0.0649 (0.14) R2dN8 : 0.000643 R2N8 : 0.00297
σ : 1.1
deviance : 553.6
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 20.19
memory length : 3883
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.1
open length of G : 15.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
548.24 1.1 3.68 0.454 0.219 0.193 1.28 -9.04 -0.0708 3.14 20.03 4362 16.1 15.2
580.13 1.12 3.78 0.811 0.258 -1.11 0.974 -- 0.0614 1.99 11.8 6990 16.2 15.8
550.81 1.09 3.7 0.368 0.27 0.136 -- -8.71 -0.0833 3.15 20.19 3881 16.1 15.2
583.52 1.13 3.78 0.731 0.23 -1.1 -- -- 0.0333 1.85 11.75 6966 16.3 15.7
553.6 1.1 3.7 0.452 -- 0.195 -- -8.15 -0.0649 -- 20.19 3883 16.1 15.2
613.47 1.16 3.81 0.843 0.157 -- 1.1 -- -0.291 3.25 -- -- -- --
617.39 1.16 3.81 0.822 0.162 -- -- -- -0.298 2.95 -- -- -- --
585.03 1.13 3.77 0.719 -- -1.08 -- -- 0.0295 -- 11.75 6949 16.3 15.9
590.35 1.13 3.75 -- 0.225 -1.09 -- -- 0.0401 1.44 11.86 8465 16 15.9
618.9 1.16 3.81 0.829 -- -- -- -- -0.294 -- -- -- -- --
635.19 1.18 3.83 -- 0.178 -- -- -- -0.389 2.97 -- -- -- --
584.37 1.13 3.71 -- -- -1.3 -- -- 0.0804 -- 12.06 8752 14.2 17.6
637.01 1.18 3.83 -- -- -- -- -- -0.386 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 547.71 temperature 20 14400 < th dose independent rect. 23 1
2 548.06 temperature 20 14400 > th dose independent rect. 23 1
3 548.61 temperature 20 14400 < th dose independent rect. 10 18
4 548.62 temperature 20 14400 < th dose independent rect. 12 16
16 548.98 temperature 20 14400 > th dose independent rect. 10 18
19 549.02 temperature 20 14400 > th dose independent rect. 12 16
41 549.40 temperature 20 14400 < th dose independent sin 16 NA
88 549.83 temperature 20 14400 > th dose independent sin 16 NA
115 550.02 temperature 20 14400 > th dose independent rect. 3 21
166 550.26 temperature 20 14400 < th dose independent rect. 2 23
170 550.27 temperature 20 14400 > th dose independent rect. 12 23
171 550.28 temperature 20 14400 < th dose independent no NA NA
181 550.29 temperature 20 14400 < th dose independent rect. 23 23
189 550.33 temperature 20 14400 > th dose independent no NA NA
202 550.35 temperature 20 14400 > th dose independent rect. 23 23
204 550.36 temperature 20 14400 < th dose independent rect. 19 23
238 550.46 temperature 20 14400 > th dose independent rect. 18 23
533 552.13 temperature 25 14400 < th dose dependent rect. 20 1
554 552.32 temperature 20 14400 > th dose independent rect. 1 1
614 553.04 temperature 25 14400 < th dose dependent rect. 19 5
622 553.07 temperature 10 14400 > th dose dependent rect. 20 1
637 553.18 temperature 25 14400 > th dose independent rect. 18 1
646 553.24 temperature 25 14400 < th dose dependent rect. 12 13
658 553.34 temperature 15 14400 > th dose dependent rect. 17 7
679 553.48 temperature 15 14400 > th dose dependent rect. 17 4
716 553.58 temperature 25 14400 < th dose dependent rect. 13 1
719 553.60 temperature 25 14400 < th dose independent rect. 18 2
720 553.60 wind 1 43200 < th dose independent rect. 24 4
740 553.66 temperature 25 14400 < th dose dependent sin 17 NA
776 553.80 wind 1 43200 > th dose independent rect. 24 4
819 553.95 temperature 25 14400 > th dose independent rect. 17 3
1000 554.62 temperature 15 14400 > th dose dependent sin 15 NA