BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0101600 Os08g0101600|AB074260
(641 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0101600 Single-strand DNA endonuclease-1 1176 0.0
Os03g0205400 Similar to Xeroderma pigmentosum complementati... 105 8e-23
Os05g0540100 Flap endonuclease-1a (EC 3.-.-.-) (OsFEN-1a) 70 5e-12
>Os08g0101600 Single-strand DNA endonuclease-1
Length = 641
Score = 1176 bits (3041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/641 (90%), Positives = 581/641 (90%)
Query: 1 MGVKNLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQMYSANRSPAFAKDKVYLKNLFHR 60
MGVKNLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQMYSANRSPAFAKDKVYLKNLFHR
Sbjct: 1 MGVKNLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQMYSANRSPAFAKDKVYLKNLFHR 60
Query: 61 IRALLALNCTLLFVTDGAIPSLKLATYRRRLGSISHAAKESDQPNSHPSISLRRNKGSEF 120
IRALLALNCTLLFVTDGAIPSLKLATYRRRLGSISHAAKESDQPNSHPSISLRRNKGSEF
Sbjct: 61 IRALLALNCTLLFVTDGAIPSLKLATYRRRLGSISHAAKESDQPNSHPSISLRRNKGSEF 120
Query: 121 SCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRDV 180
SCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRDV
Sbjct: 121 SCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRDV 180
Query: 181 FIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVNGFGPETACRLVKSVGDN 240
FIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVNGFGPETACRLVKSVGDN
Sbjct: 181 FIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVNGFGPETACRLVKSVGDN 240
Query: 241 LILDQILSNGVKATRKCKGKNSGNKVDDMCPKASSCEVGMTQDSDGQFRDVINAYLEPKC 300
LILDQILSNGVKATRKCKGKNSGNKVDDMCPKASSCEVGMTQDSDGQFRDVINAYLEPKC
Sbjct: 241 LILDQILSNGVKATRKCKGKNSGNKVDDMCPKASSCEVGMTQDSDGQFRDVINAYLEPKC 300
Query: 301 HSPDSEAVQRVCGQHPFLRPQLQKICEEYFDWSPEKTDQYILPKIAERELRRFSDLRSAS 360
HSPDSEAVQRVCGQHPFLRPQLQKICEEYFDWSPEKTDQYILPKIAERELRRFSDLRSAS
Sbjct: 301 HSPDSEAVQRVCGQHPFLRPQLQKICEEYFDWSPEKTDQYILPKIAERELRRFSDLRSAS 360
Query: 361 SALGIKPLLSEIPVPCPVLAIVKQRKVHGNECYEVSWRNIEGLQVSVVPGDLVKSACPEK 420
SALGIKPLLSEIPVPCPVLAIVKQRKVHGNECYEVSWRNIEGLQVSVVPGDLVKSACPEK
Sbjct: 361 SALGIKPLLSEIPVPCPVLAIVKQRKVHGNECYEVSWRNIEGLQVSVVPGDLVKSACPEK 420
Query: 421 ITEFLXXXXXXXXXXRRARPKKSGQAAVKDVDEQLQELLLGIEADSGGILGATASVCQTL 480
ITEFL RRARPKKSGQAAVKDVDEQLQELLLGIEADSGGILGATASVCQTL
Sbjct: 421 ITEFLEKKGEEKKQKRRARPKKSGQAAVKDVDEQLQELLLGIEADSGGILGATASVCQTL 480
Query: 481 TAAYTVAVEDVVDXXXXXXXXXXXXXXXXXMMAEDVNVAGMNMNKMXXXXXXXXXXXXXD 540
TAAYTVAVEDVVD MMAEDVNVAGMNMNKM D
Sbjct: 481 TAAYTVAVEDVVDLSSPSPPLRKLSKSQKKMMAEDVNVAGMNMNKMESESSFSTQSSTSD 540
Query: 541 VDNQLIDLSSPLAGGDNGMKGGRRALADISNVGSHSTETDXXXXXXXXVASVGHGTTIDL 600
VDNQLIDLSSPLAGGDNGMKGGRRALADISNVGSHSTETD VASVGHGTTIDL
Sbjct: 541 VDNQLIDLSSPLAGGDNGMKGGRRALADISNVGSHSTETDGGGGGGGGVASVGHGTTIDL 600
Query: 601 SSPSPAIGXXXXXXXXXXXXIHERKARDLRMFLDSIRNELY 641
SSPSPAIG IHERKARDLRMFLDSIRNELY
Sbjct: 601 SSPSPAIGDRSRVHHDDDDVIHERKARDLRMFLDSIRNELY 641
>Os03g0205400 Similar to Xeroderma pigmentosum complementation group G protein
splice variant
Length = 1470
Score = 105 bits (263), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 133/298 (44%), Gaps = 55/298 (18%)
Query: 121 SCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRDV 180
S M E + L G+P + EAEAQCA +++ +L DG T DSD FLFGAR VY+++
Sbjct: 854 SEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYKNI 913
Query: 181 FIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVNGFGPETACRLVKSVGDN 240
F + YV Y M+DIE LG R LI +A+LLGSDY+ G++G G A + + +
Sbjct: 914 F-DDRKYVETYLMKDIESELGLTREQLIRMAMLLGSDYTEGISGIGIVNAIEVAHAFPEE 972
Query: 241 --------------------LILDQILSNGVKATRKCKGKNSGNKVDDMCPKAS--SCEV 278
L ++ S+ K + + GN ++ K S S
Sbjct: 973 DGLQKFREWVESPDPTLLGKLGMESGSSSKKKKSGRNHSDGKGNSLEPEYAKGSDDSQSS 1032
Query: 279 GMTQDSDGQF----RDVINAYLEPKCHSPDSEAV-------QRVCGQHPFL--RPQ---L 322
TQ F R+V + P SEAV Q PF RP L
Sbjct: 1033 NETQRIKEIFMSKHRNVSKNWHIPSTFP--SEAVINAYISPQVDDSTEPFSWGRPDSGLL 1090
Query: 323 QKICEEYFDWSPEKTDQYILPKI-----AERELR---------RFSDLRSASSALGIK 366
+K+C E F WS EK D+ ++P + E +LR RF+ +RS IK
Sbjct: 1091 RKLCWERFGWSKEKADELLIPVLREYNKHETQLRMEAFYSFNERFAKIRSKRIKKAIK 1148
>Os05g0540100 Flap endonuclease-1a (EC 3.-.-.-) (OsFEN-1a)
Length = 380
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 15/206 (7%)
Query: 53 YLKNLFHRIRALLALNCTLLFVTDGAIPSLKLATYRRRLG-------SISHAAKESDQPN 105
+L+ +F+R LL ++V DG P LK +R ++ A +E D+ +
Sbjct: 64 HLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGDK-D 122
Query: 106 SHPSISLRRNKGSEFSCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSD 165
+ S R K ++ +E KRL +G+P ++ EAEA+CA+L + + + D
Sbjct: 123 AIEKFSKRTVKVTKQHN--EECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASED 180
Query: 166 SDAFLFGARTVYRDVFIGEGGY--VICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVN 223
D+ FGA R + V+ +E+ + + L + I L +L G DY + +
Sbjct: 181 MDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIK 240
Query: 224 GFGPETACRLVKSVGDNLILDQILSN 249
G G +TA +L++ G ++ IL N
Sbjct: 241 GIGGQTALKLIRQHGS---IESILEN 263
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,917,908
Number of extensions: 798085
Number of successful extensions: 1683
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1680
Number of HSP's successfully gapped: 3
Length of query: 641
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 534
Effective length of database: 11,448,903
Effective search space: 6113714202
Effective search space used: 6113714202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)