Os08g0101600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Single-strand DNA endonuclease-1.
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Os08g0101600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Single-strand DNA endonuclease-1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.6 | 0.395 | 8.66 | -2.54 | 1.13 | 1.73 | 0.413 | -2.83 | -0.201 | 3.51 | 20.39 | 1393 | -- | -- |
| 75.91 | 0.406 | 8.55 | -1.76 | 1.08 | 1.91 | 0.492 | -- | 0.011 | 3.59 | 16 | 1358 | -- | -- |
| 71.01 | 0.392 | 8.66 | -2.53 | 1.1 | 1.75 | -- | -2.86 | -0.2 | 3.57 | 20.53 | 1335 | -- | -- |
| 75.31 | 0.404 | 8.57 | -1.8 | 1.1 | 2.18 | -- | -- | 0.00603 | 3.51 | 14.14 | 1351 | -- | -- |
| 129.96 | 0.531 | 8.66 | -2.53 | -- | 2.05 | -- | -2.92 | -0.2 | -- | 20.65 | 1183 | -- | -- |
| 154.61 | 0.583 | 8.48 | -1.11 | 1.26 | -- | 0.375 | -- | 0.403 | 3.38 | -- | -- | -- | -- |
| 155.05 | 0.583 | 8.48 | -1.12 | 1.26 | -- | -- | -- | 0.401 | 3.36 | -- | -- | -- | -- |
| 134.24 | 0.54 | 8.56 | -1.84 | -- | 2.51 | -- | -- | 0.0107 | -- | 15.09 | 1174 | -- | -- |
| 149.06 | 0.569 | 8.5 | -- | 1.09 | 1.45 | -- | -- | 0.318 | 3.62 | 5.757 | 1237 | -- | -- |
| 244.79 | 0.731 | 8.48 | -1.07 | -- | -- | -- | -- | 0.435 | -- | -- | -- | -- | -- |
| 188.16 | 0.642 | 8.45 | -- | 1.24 | -- | -- | -- | 0.526 | 3.36 | -- | -- | -- | -- |
| 206.76 | 0.67 | 8.51 | -- | -- | 1.38 | -- | -- | 0.303 | -- | 21.6 | 1177 | -- | -- |
| 274.84 | 0.774 | 8.45 | -- | -- | -- | -- | -- | 0.553 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.13 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 11 | 69.27 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 12 | 69.29 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 13 | 69.29 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 15 | 69.30 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 23 | 70.10 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 30 | 70.21 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 10 |
| 34 | 70.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 35 | 70.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 49 | 70.54 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 61 | 70.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 74 | 70.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 22 |
| 99 | 70.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 100 | 70.99 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 110 | 71.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 141 | 71.16 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 355 | 72.10 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 413 | 72.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 454 | 72.42 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 9 |
| 459 | 72.44 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 17 |
| 498 | 72.52 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 538 | 72.59 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 557 | 72.64 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 576 | 72.69 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 605 | 72.78 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 683 | 72.94 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 689 | 72.95 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 773 | 73.11 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 809 | 73.21 | radiation | 1 | 43200 | < th | dose dependent | sin | 13 | NA |
| 813 | 73.22 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 821 | 73.24 | temperature | 20 | 1440 | > th | dose dependent | sin | 3 | NA |
| 949 | 73.51 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 8 |
| 961 | 73.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 21 |