BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0101600 Os08g0101600|AB074260
(641 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G48900.2 | chr3:18131854-18136239 FORWARD LENGTH=601 491 e-139
AT1G01880.1 | chr1:306558-308991 REVERSE LENGTH=600 130 2e-30
AT3G28030.1 | chr3:10424321-10431178 FORWARD LENGTH=1480 125 1e-28
AT5G26680.1 | chr5:9311882-9315458 REVERSE LENGTH=454 77 3e-14
>AT3G48900.2 | chr3:18131854-18136239 FORWARD LENGTH=601
Length = 600
Score = 491 bits (1263), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/432 (54%), Positives = 314/432 (72%), Gaps = 11/432 (2%)
Query: 1 MGVKNLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQMYSANRSPAFAKDKVYLKNLFHR 60
MGVK LWD+LE CKK PL HLQNK+VCVDLSCW+V+++ N+S K+KVYL+ FHR
Sbjct: 1 MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFFHR 60
Query: 61 IRALLALNCTLLFVTDGAIPSLKLATYRRRLGSISHAAKESDQPNSHPSISLRRNKGSEF 120
+RAL+ALNC+++ V+DGAIP +K+ TY+RRL + A + +P+ SL+RN GSEF
Sbjct: 61 LRALIALNCSIILVSDGAIPGIKVPTYKRRLKARFEIADDGVEPSKE--TSLKRNMGSEF 118
Query: 121 SCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRDV 180
SC+IKEAK + LGI CLDG+EEAEAQCA L+ ESLCD CF+ DSD FLFGA+TVYR++
Sbjct: 119 SCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYREI 178
Query: 181 FIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVNGFGPETACRLVKSVGDN 240
+GEGGYV+CYEM+DI+K LG GRNSLI+LA+LLGSDYS GV G E AC LV+S+GDN
Sbjct: 179 CLGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELVRSIGDN 238
Query: 241 LILDQILSNGVKATRKCKGKNSGNKVDDMCPKASSCEV----GMTQDSD--GQFRDVINA 294
+IL+++ S G+ K + K+ +C K + + G +D + + + VI+A
Sbjct: 239 VILEKVASEGLSFAEKPR-KSKKQVRPSVCSKKGTLPLVVINGNNRDPERLEEIKQVIDA 297
Query: 295 YLEPKCHSPDSEAVQRVCGQHPFLRPQLQKICEEYFDWSPEKTDQYILPKIAERELRRFS 354
++ PKCH DS V R + F R +LQ+IC ++F+W PEKTD+YILPK+AER LRRF+
Sbjct: 298 FMNPKCHQADSNTVSRALAEFSFQRTKLQEICHQFFEWPPEKTDEYILPKVAERNLRRFA 357
Query: 355 DLRSASSALGIK-PLLS-EIPVPCPVLAIVKQRKVHGNECYEVSWRNIEGLQVSVVPGDL 412
+L+S S+ + + PL ++P CPV I+K RKV G EC+EVSW ++EGL+ S+VP DL
Sbjct: 358 NLQSRSTEVEVNLPLHKPQMPEKCPVSEIIKTRKVQGRECFEVSWNDLEGLESSIVPADL 417
Query: 413 VKSACPEKITEF 424
V+ ACPEKI EF
Sbjct: 418 VERACPEKIIEF 429
>AT1G01880.1 | chr1:306558-308991 REVERSE LENGTH=600
Length = 599
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 131/257 (50%), Gaps = 11/257 (4%)
Query: 1 MGVK-NLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQMYSANRSPAFAKDKVYLKNLFH 59
MGV N WD+L ++ L+NK+V VDLS W+VQ +A + K +L+ F
Sbjct: 1 MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVL---KPHLRLTFF 57
Query: 60 RIRALLA-LNCTLLFVTDGAIPSLKLATYRRRLGSISHAAKESDQPNSHPSISLRRNKGS 118
R L + +FV DG LK R S + P +S+ RNK
Sbjct: 58 RTINLFSKFGAYPVFVVDGTPSPLKSQARISRFFR-SSGIDTCNLPVIKDGVSVERNK-- 114
Query: 119 EFSCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYR 178
FS ++E L LGIP L EAEA CA L+ + D C T DSDAFLFGA V +
Sbjct: 115 LFSEWVRECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIK 174
Query: 179 DVFIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDY-SNGVNGFGPETACRLVKSV 237
D+ CY M IE LG R LI++++L+G+DY S GV G G + A R+V+
Sbjct: 175 DIKPNSREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREF 234
Query: 238 GDNLILDQI--LSNGVK 252
++ +L+++ + NG++
Sbjct: 235 SEDQVLERLQDIGNGLQ 251
>AT3G28030.1 | chr3:10424321-10431178 FORWARD LENGTH=1480
Length = 1479
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 129/269 (47%), Gaps = 35/269 (13%)
Query: 112 LRRNKGSEFSCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLF 171
L RN S S M E + L GIP + EAEAQCA ++ +L DG T DSD FLF
Sbjct: 914 LERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLF 973
Query: 172 GARTVYRDVFIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVNGFGPETAC 231
GAR+VY+++F + YV Y M+DIEK LG R+ +I +A+LLGSDY+ G++G G A
Sbjct: 974 GARSVYKNIF-DDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIGIVNAI 1032
Query: 232 RLVKSVGDNLIL----------DQILSNGVKATRKCKGKNSGNKVDDMCPKASSCEVGMT 281
+V + + L D + A K K G+ D S T
Sbjct: 1033 EVVTAFPEEDGLQKFREWVESPDPTILGKTDAKTGSKVKKRGSASVDNKGIISGASTDDT 1092
Query: 282 QDSDGQFRD-------------------VINAYLEPKCHSPDSEAVQRVCGQHPFLRPQL 322
++ F D VI+AYL P+ + ++ P L L
Sbjct: 1093 EEIKQIFMDQHRKVSKNWHIPLTFPSEAVISAYLNPQVDL----STEKFSWGKPDL-SVL 1147
Query: 323 QKICEEYFDWSPEKTDQYILPKIAERELR 351
+K+C E F+W+ +KTD+ +LP + E E R
Sbjct: 1148 RKLCWEKFNWNGKKTDELLLPVLKEYEKR 1176
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 1 MGVKNLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQMYSANR-SPAFAKDKVYLKNLFH 59
MGV+ LW++L +++ + L NK++ +D S W+VQ A R +L F
Sbjct: 1 MGVQGLWELLAPVGRRVSVETLANKRLAIDASIWMVQFIKAMRDEKGDMVQNAHLIGFFR 60
Query: 60 RIRALLALNCTLLFVTDGAIPSLKLATY--RRR 90
RI LL L +FV DGA P+LK T RRR
Sbjct: 61 RICKLLFLRTKPIFVFDGATPALKRRTVIARRR 93
>AT5G26680.1 | chr5:9311882-9315458 REVERSE LENGTH=454
Length = 453
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 114/273 (41%), Gaps = 34/273 (12%)
Query: 1 MGVKNLWDILE----SCKKKLPLHHLQNKKVCVDLSCWLVQMY-------SANRSPAFAK 49
MG+K L +L SC K+ +K+ VD S + Q + + +
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60
Query: 50 DKVYLKNLFHRIRALLALNCTLLFVTDGAIPSLKLATYRRRL-----------GSISHAA 98
+L+ +F+R LL ++V DG P LK +R G+I
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120
Query: 99 KESDQPNSHPSISLRRNKGSEFSCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLC 158
KE + S ++ + + + KRL +G+P ++ EAEAQCA+L
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDD-------CKRLLRLMGVPVVEATSEAEAQCAALCKSGKV 173
Query: 159 DGCFTSDSDAFLFGARTVYRDVFIGEGGY--VICYEMEDIEKTLGFGRNSLISLAVLLGS 216
G + D D+ FGA R + V+ +E+ I + L + I L +L G
Sbjct: 174 YGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGC 233
Query: 217 DYSNGVNGFGPETACRLVKSVGDNLILDQILSN 249
DY + + G G +TA +L++ G ++ IL N
Sbjct: 234 DYCDSIRGIGGQTALKLIRQHGS---IETILEN 263
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,813,030
Number of extensions: 524663
Number of successful extensions: 1136
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1126
Number of HSP's successfully gapped: 5
Length of query: 641
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 536
Effective length of database: 8,227,889
Effective search space: 4410148504
Effective search space used: 4410148504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)